RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 C1orf21Q9H246 121 aa18.58■□□□□ 0.57
USP48-204ENST00000400301 AK5Q9Y6K8 562 aa18.58■□□□□ 0.57
USP48-204ENST00000400301 NELFEP18615 380 aaKnown RBP18.58■□□□□ 0.57
USP48-204ENST00000400301 TTPAP49638 278 aa18.58■□□□□ 0.57
USP48-204ENST00000400301 ROR2Q01974 943 aaKnown RBP18.58■□□□□ 0.57
USP48-204ENST00000400301 TTC23LQ6PF05 361 aa18.58■□□□□ 0.57
USP48-204ENST00000400301 SLC24A5Q71RS6 500 aa18.58■□□□□ 0.57
USP48-204ENST00000400301 CAMK1DQ8IU85 385 aa18.58■□□□□ 0.57
USP48-204ENST00000400301 UTP4Q969X6 686 aaKnown RBP18.58■□□□□ 0.57
USP48-204ENST00000400301 AGO1Q9UL18 857 aaKnown RBP18.58■□□□□ 0.57
USP48-204ENST00000400301 C9JVG2 144 aa18.58■□□□□ 0.56
USP48-204ENST00000400301 NPHS1O60500 1241 aa18.58■□□□□ 0.56
USP48-204ENST00000400301 RPP40O75818 363 aaKnown RBP18.58■□□□□ 0.56
USP48-204ENST00000400301 ACAP2Q15057 778 aa18.58■□□□□ 0.56
USP48-204ENST00000400301 ELOVL6Q9H5J4 265 aa18.58■□□□□ 0.56
USP48-204ENST00000400301 PARVBQ9HBI1 364 aa18.58■□□□□ 0.56
USP48-204ENST00000400301 ZDHHC2Q9UIJ5 367 aa18.58■□□□□ 0.56
USP48-204ENST00000400301 SMIM31A0A1B0GVY4 71 aa18.58■□□□□ 0.56
USP48-204ENST00000400301 TMEM233B4DJY2 109 aa18.58■□□□□ 0.56
USP48-204ENST00000400301 DCLK1O15075 740 aa18.58■□□□□ 0.56
USP48-204ENST00000400301 YBEYP58557 167 aaPredicted RBP18.58■□□□□ 0.56
USP48-204ENST00000400301 ATP6V0D1P61421 351 aa18.58■□□□□ 0.56
USP48-204ENST00000400301 PARP15Q460N3 678 aa18.58■□□□□ 0.56
USP48-204ENST00000400301 ARHGAP36Q6ZRI8 547 aa18.58■□□□□ 0.56
USP48-204ENST00000400301 CYS1Q717R9 158 aa18.58■□□□□ 0.56
USP48-204ENST00000400301 STK32CQ86UX6 486 aa18.58■□□□□ 0.56
USP48-204ENST00000400301 DHRSXQ8N5I4 330 aa18.58■□□□□ 0.56
USP48-204ENST00000400301 OR6C75A6NL08 312 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 DEAF1O75398 565 aaPredicted RBP18.57■□□□□ 0.56
USP48-204ENST00000400301 TBX18O95935 607 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 URODP06132 367 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 SLC2A13Q96QE2 648 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 SENP6Q9GZR1 1112 aaPredicted RBP18.57■□□□□ 0.56
USP48-204ENST00000400301 CACYBPQ9HB71 228 aaKnown RBP18.57■□□□□ 0.56
USP48-204ENST00000400301 DNAJB4Q9UDY4 337 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 ANAPC2Q9UJX6 822 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 GNEQ9Y223 722 aaKnown RBP18.57■□□□□ 0.56
USP48-204ENST00000400301 LZTS1Q9Y250 596 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 SLC45A1Q9Y2W3 748 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 MLYCDO95822 493 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 HNRNPCP07910 306 aaKnown RBP eCLIP18.57■□□□□ 0.564e-6■■■□□ 17
USP48-204ENST00000400301 CCNHP51946 323 aaPredicted RBP18.57■□□□□ 0.56
USP48-204ENST00000400301 EPHB3P54753 998 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 LIN52Q52LA3 116 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 FAM98BQ52LJ0 330 aaKnown RBP18.57■□□□□ 0.56
USP48-204ENST00000400301 EPGNQ6UW88 154 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 GPRIN1Q7Z2K8 1008 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 SPPL2BQ8TCT7 592 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 MRPL9Q9BYD2 267 aaKnown RBP18.57■□□□□ 0.56
USP48-204ENST00000400301 COMMD8Q9NX08 183 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 GTF2IRD1Q9UHL9 959 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 OR51F1A6NGY5 319 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 SLC7A4O43246 635 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 PQBP1O60828 265 aaKnown RBP18.57■□□□□ 0.56
USP48-204ENST00000400301 NDST3O95803 873 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 ELNP15502 786 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 CDH2P19022 906 aaPredicted RBP18.57■□□□□ 0.56
USP48-204ENST00000400301 THOP1P52888 689 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 SLC10A7Q0GE19 358 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 STEAP4Q687X5 459 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 STK40Q8N2I9 435 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 SMG8Q8ND04 991 aaKnown RBP18.57■□□□□ 0.56
USP48-204ENST00000400301 TSPAN14Q8NG11 270 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 CENPIQ92674 756 aaPredicted RBP18.57■□□□□ 0.56
USP48-204ENST00000400301 CCDC106Q9BWC9 280 aa18.57■□□□□ 0.56
USP48-204ENST00000400301 DHRS12A0PJE2 317 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 SEC22BO75396 215 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 TIPRLO75663 272 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 LRG1P02750 347 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 CCR10P46092 362 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 PGGT1BP53609 377 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 MAMDC4Q6UXC1 1216 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 OR7D4Q8NG98 312 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 FOPNLQ96NB1 174 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 TIMM22Q9Y584 194 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 PCDHB9Q9Y5E1 797 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 TTC36A6NLP5 189 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 KRT6AP02538 564 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 KRT6BP04259 564 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 TYMPP19971 482 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 KRT6CP48668 564 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 NDST2P52849 883 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 BCL2L1Q07817 233 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 TRAF2Q12933 501 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 GDF6Q6KF10 455 aaPredicted RBP18.56■□□□□ 0.56
USP48-204ENST00000400301 GPRIN3Q6ZVF9 776 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 CLVS1Q8IUQ0 354 aaPredicted RBP18.56■□□□□ 0.56
USP48-204ENST00000400301 FAM120BQ96EK7 910 aaKnown RBP18.56■□□□□ 0.56
USP48-204ENST00000400301 LINGO1Q96FE5 620 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 SH3GL1Q99961 368 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 SCN9AQ15858 1988 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 C9IYK1 514 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 XRCC1P18887 633 aaPredicted RBP18.56■□□□□ 0.56
USP48-204ENST00000400301 GJA9P57773 515 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 TIGD2Q4W5G0 525 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 VARS2Q5ST30 1063 aaKnown RBP18.56■□□□□ 0.56
USP48-204ENST00000400301 CIB1Q99828 191 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 UNC93B1Q9H1C4 597 aa18.56■□□□□ 0.56
USP48-204ENST00000400301 NOL11Q9H8H0 719 aaKnown RBP18.56■□□□□ 0.56
USP48-204ENST00000400301 LIMD1Q9UGP4 676 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms