RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 CTAGE1Q96RT6 745 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 ADAM2Q99965 735 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 MRI1Q9BV20 369 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 ALOXE3Q9BYJ1 711 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 DPH5Q9H2P9 285 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 RPAP3Q9H6T3 665 aaPredicted RBP4.2□□□□□ -1.74
HMGB1-204ENST00000399489 OGFRQ9NZT2 677 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 PTBP2Q9UKA9 531 aaKnown RBP4.2□□□□□ -1.74
HMGB1-204ENST00000399489 SHOC2Q9UQ13 582 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 MTMR6Q9Y217 621 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 ASB3Q9Y575 518 aa4.2□□□□□ -1.74
HMGB1-204ENST00000399489 HTR3EA5X5Y0 456 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 CXorf49A8MYA2 514 aaPredicted RBP4.19□□□□□ -1.74
HMGB1-204ENST00000399489 ADM5C9JUS6 153 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 AGPSO00116 658 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 ADCY5O95622 1261 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 POMCP01189 267 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 ATP5JP18859 108 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 KCNA3P22001 575 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 PAX7P23759 505 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 RPA1P27694 616 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 HOXD10P28358 340 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 ATP5OP48047 213 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 CLK3P49761 638 aaKnown RBP4.19□□□□□ -1.74
HMGB1-204ENST00000399489 KHKP50053 298 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 PGDP52209 483 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 EFNA5P52803 228 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 MVDP53602 400 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 GOLGA8FQ08AF8 430 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 FOXI1Q12951 378 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 RRS1Q15050 365 aaKnown RBP4.19□□□□□ -1.74
HMGB1-204ENST00000399489 INAQ16352 499 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 PTCHD3Q3KNS1 767 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 CCDC40Q4G0X9 1142 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 RUNDC3AQ59EK9 446 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 UTP14CQ5TAP6 766 aaKnown RBP4.19□□□□□ -1.74
HMGB1-204ENST00000399489 FAM171A1Q5VUB5 890 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 ANKRD40Q6AI12 368 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 HEPHL1Q6MZM0 1159 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 ZNF529Q6P280 563 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 ARHGAP11AQ6P4F7 1023 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 PPP1R21Q6ZMI0 780 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 ADCK2Q7Z695 626 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 FSTL5Q8N475 847 aaPredicted RBP4.19□□□□□ -1.74
HMGB1-204ENST00000399489 AFAP1Q8N556 730 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 NOC3LQ8WTT2 800 aaKnown RBP4.19□□□□□ -1.74
HMGB1-204ENST00000399489 RAB40AQ8WXH6 277 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 HDAC11Q96DB2 347 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 KLHL32Q96NJ5 620 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 HIST1H2AAQ96QV6 131 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 KCNK16Q96T55 309 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 NUP85Q9BW27 656 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 OSGEPL1Q9H4B0 414 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 NMRK1Q9NWW6 199 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 AIPL1Q9NZN9 384 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 SEPT10Q9P0V9 454 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 CLIP2Q9UDT6 1046 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 RAB21Q9UL25 225 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 WDR37Q9Y2I8 494 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 UBE2J1Q9Y385 318 aaPredicted RBP4.19□□□□□ -1.74
HMGB1-204ENST00000399489 KDRP35968 1356 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 NESP48681 1621 aa4.19□□□□□ -1.74
HMGB1-204ENST00000399489 A0A0G2JPF8 293 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 FAM90A8PA6NJQ4 464 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 A6NL46 340 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 KDM4EB2RXH2 506 aaPredicted RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 HNRNPCL3B7ZW38 293 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 GRM8O00222 908 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 SEC31AO94979 1220 aaKnown RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 PRSS23O95084 383 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 IPO7O95373 1038 aaKnown RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 FAM90A13PP0C7W8 464 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 FAM90A24PP0C7X0 464 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 HNRNPCL4P0DMR1 293 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 UROSP10746 265 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 PEPDP12955 493 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 ZNF37AP17032 561 aaPredicted RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 CCNCP24863 283 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 YY1P25490 414 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 HOXA13P31271 388 aaPredicted RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 MTIF2P46199 727 aaKnown RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 CAMPP49913 170 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 DGKEP52429 567 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 GBX2P52951 348 aaPredicted RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 KIAA1024LP59773 190 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 RPL15P61313 204 aaKnown RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 MECOMQ03112 1051 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 CUL2Q13617 745 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 SH2D4BQ5SQS7 431 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 KRT79Q5XKE5 535 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 TPGS2Q68CL5 300 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 ZYG11AQ6WRX3 759 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 KCTD9Q7L273 389 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 MIER3Q7Z3K6 550 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 CAMKMTQ7Z624 323 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 UNC5CLQ8IV45 518 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 TMEM132CQ8N3T6 1108 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 PDPRQ8NCN5 879 aa4.18□□□□□ -1.74
HMGB1-204ENST00000399489 CNOT9Q92600 299 aaKnown RBP4.18□□□□□ -1.74
HMGB1-204ENST00000399489 NPIPB3Q92617 1050 aa4.18□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms