RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 FAM155BO75949 473 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 HIST1H2ABP04908 130 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 S100A2P29034 98 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 MNDAP41218 407 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 ALDH3A2P51648 485 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 SLC12A3P55017 1021 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 IRF8Q02556 426 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 HIST3H2AQ7L7L0 130 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 NKAPQ8N5F7 415 aaKnown RBP11.88□□□□□ -0.51
SYNPO-202ENST00000394243 TBC1D16Q8TBP0 767 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 PTCD2Q8WV60 388 aaKnown RBP11.88□□□□□ -0.51
SYNPO-202ENST00000394243 ASB12Q8WXK4 309 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 HIST1H2ACQ93077 130 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 TNS3Q68CZ2 1445 aa11.88□□□□□ -0.51
SYNPO-202ENST00000394243 AGPSO00116 658 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 ITIH1P19827 911 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 LHX1P48742 406 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 GPR180Q86V85 440 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 HASPINQ8TF76 798 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 SAMD4AQ9UPU9 718 aaKnown RBP11.87□□□□□ -0.51
SYNPO-202ENST00000394243 SIGLEC16A6NMB1 481 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 ZNF24P17028 368 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 CRHR1P34998 444 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 ADGRE1Q14246 886 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 NCCRP1Q6ZVX7 275 aaPredicted RBP11.87□□□□□ -0.51
SYNPO-202ENST00000394243 PPM1MQ96MI6 270 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 ABT1Q9ULW3 272 aaKnown RBP11.87□□□□□ -0.51
SYNPO-202ENST00000394243 POLR3HQ9Y535 204 aaPredicted RBP11.87□□□□□ -0.51
SYNPO-202ENST00000394243 CLUHO75153 1309 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 FABP12A6NFH5 140 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 BUD23O43709 281 aaKnown RBP11.87□□□□□ -0.51
SYNPO-202ENST00000394243 RPN2P04844 631 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 ANXA5P08758 320 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 SLC6A2P23975 617 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 CTBP1Q13363 440 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 RAPSNQ13702 412 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 ACSBG2Q5FVE4 666 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 TRIM40Q6P9F5 258 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 SYCE2Q6PIF2 218 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 LEMD2Q8NC56 503 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 GLIS3Q8NEA6 775 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 ATL1Q8WXF7 558 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 SPATA5L1Q9BVQ7 753 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 RSPH9Q9H1X1 276 aaPredicted RBP11.87□□□□□ -0.51
SYNPO-202ENST00000394243 DNAJC28Q9NX36 388 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 AP3D1O14617 1153 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 SNX4O95219 450 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 TRUB2O95900 331 aaKnown RBP11.87□□□□□ -0.51
SYNPO-202ENST00000394243 UGT2B4P06133 528 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 NTSP30990 170 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 DLG2Q15700 870 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 CNSTQ6PJW8 725 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 AFTPHQ6ULP2 937 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 SPAG16Q8N0X2 631 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 FBXO9Q9UK97 447 aaPredicted RBP11.87□□□□□ -0.51
SYNPO-202ENST00000394243 USP20Q9Y2K6 914 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 IRGMA1A4Y4 181 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 EFCAB9A8MZ26 197 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 TRAFD1O14545 582 aaPredicted RBP11.87□□□□□ -0.51
SYNPO-202ENST00000394243 YES1P07947 543 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 CDH13P55290 713 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 LZTR1Q8N653 840 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 COL26A1Q96A83 441 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 TKTL2Q9H0I9 626 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 AASDHPPTQ9NRN7 309 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 DNAJC11Q9NVH1 559 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 DDX43Q9NXZ2 648 aaKnown RBP11.87□□□□□ -0.51
SYNPO-202ENST00000394243 AXIN2Q9Y2T1 843 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 H3BM21 787 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 SLC30A4O14863 429 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 CHP2O43745 196 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 TIE1P35590 1138 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 COLEC12Q5KU26 742 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 CENPNQ96H22 339 aaPredicted RBP11.87□□□□□ -0.51
SYNPO-202ENST00000394243 CEP295NLQ96MC4 621 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 FCRL4Q96PJ5 515 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 ST3GAL5Q9UNP4 418 aa11.87□□□□□ -0.51
SYNPO-202ENST00000394243 SGTAO43765 313 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 CABYRO75952 493 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 IFNA6P05013 189 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 ICAM1P05362 532 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 AP2S1P53680 142 aaPredicted RBP11.86□□□□□ -0.51
SYNPO-202ENST00000394243 MAPK12P53778 367 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 TBX4P57082 545 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 CBFBQ13951 182 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 FBXO47Q5MNV8 452 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP11.86□□□□□ -0.51
SYNPO-202ENST00000394243 CUZD1Q86UP6 607 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 C4orf19Q8IY42 314 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 MAB21L3Q8N8X9 362 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 ZNHIT2Q9UHR6 403 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 CCNDBP1O95273 360 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 APOC1P02654 83 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 PIGWQ7Z7B1 504 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 ZNF433Q8N7K0 673 aaPredicted RBP11.86□□□□□ -0.51
SYNPO-202ENST00000394243 CD101Q93033 1021 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 POP5Q969H6 163 aaKnown RBP11.86□□□□□ -0.51
SYNPO-202ENST00000394243 AGXT2Q9BYV1 514 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 EHD1Q9H4M9 534 aa11.86□□□□□ -0.51
SYNPO-202ENST00000394243 AGO4Q9HCK5 861 aaKnown RBP11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms