RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 RNF19BQ6ZMZ0 732 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 MIPP30301 263 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 AKT2P31751 481 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 MANFP55145 182 aaKnown RBP12.5□□□□□ -0.41
VPS13A-204ENST00000376634 MED22Q15528 200 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 C12orf56Q8IXR9 622 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 OR5T3Q8NGG3 340 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 PANX1Q96RD7 426 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 GNEQ9Y223 722 aaKnown RBP12.5□□□□□ -0.41
VPS13A-204ENST00000376634 ENPEPQ07075 957 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 LIPMQ5VYY2 423 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 SV2AQ7L0J3 742 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 MROH2AA6NES4 1674 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 HGFP14210 728 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 PAX3P23760 479 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 FAAP100Q0VG06 881 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 TNFAIP8L3Q5GJ75 292 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 TMC8Q8IU68 726 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 OR10H5Q8NGA6 315 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 RAPGEFL1Q9UHV5 662 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 RIIAD1A6NNX1 92 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 PDE2AO00408 941 aaPredicted RBP12.5□□□□□ -0.41
VPS13A-204ENST00000376634 RECQL4O94761 1208 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 ELFN1P0C7U0 828 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 RPL38P63173 70 aaKnown RBP12.5□□□□□ -0.41
VPS13A-204ENST00000376634 GCNT1Q02742 428 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 ABRQ12979 859 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 PCID2Q5JVF3 399 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 IFT46Q9NQC8 304 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 KCNA5P22460 613 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 CLCN5P51795 746 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 DENND1CQ8IV53 801 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 AIFM2Q9BRQ8 373 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 CNTNAP4Q9C0A0 1308 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 PECAM1P16284 738 aaPredicted RBP12.5□□□□□ -0.41
VPS13A-204ENST00000376634 PCBP1Q15365 356 aaKnown RBP eCLIP12.5□□□□□ -0.416e-6■□□□□ 8.7
VPS13A-204ENST00000376634 ATP13A4Q4VNC1 1196 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 PACS2Q86VP3 889 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 CCDC54Q8NEL0 328 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 TNKS2Q9H2K2 1166 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 PLGRKTQ9HBL7 147 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 OR14I1A6ND48 311 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 H0Y858 1186 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 FAM86B2P0C5J1 330 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 DPYSL3Q14195 570 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 CPTPQ5TA50 214 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 LLGL2Q6P1M3 1020 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 SNX20Q7Z614 316 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 SFRP1Q8N474 314 aa12.5□□□□□ -0.41
VPS13A-204ENST00000376634 CACNB4O00305 520 aaPredicted RBP12.49□□□□□ -0.41
VPS13A-204ENST00000376634 CBX2Q14781 532 aaPredicted RBP12.49□□□□□ -0.41
VPS13A-204ENST00000376634 SPDYCQ5MJ68 293 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 FOXR1Q6PIV2 292 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 TXNDC11Q6PKC3 985 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 SPESP1Q6UW49 350 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 HJURPQ8NCD3 748 aaPredicted RBP12.49□□□□□ -0.41
VPS13A-204ENST00000376634 PIWIL2Q8TC59 973 aaKnown RBP12.49□□□□□ -0.41
VPS13A-204ENST00000376634 ITGAVP06756 1048 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 ADORA2AP29274 412 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 PTDSS1P48651 473 aaKnown RBP12.49□□□□□ -0.41
VPS13A-204ENST00000376634 NR1H2P55055 460 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 RAB10P61026 200 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 EFR3AQ14156 821 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 FAM91A1Q658Y4 838 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 MCEMP1Q8IX19 187 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 FBXW8Q8N3Y1 598 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 PIK3R3Q92569 461 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 EFHD2Q96C19 240 aaPredicted RBP12.49□□□□□ -0.41
VPS13A-204ENST00000376634 TRNT1Q96Q11 434 aaKnown RBP12.49□□□□□ -0.41
VPS13A-204ENST00000376634 ASB7Q9H672 318 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 ETNK2Q9NVF9 386 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 TFECO14948 347 aaPredicted RBP12.49□□□□□ -0.41
VPS13A-204ENST00000376634 CD44P16070 742 aaKnown RBP12.49□□□□□ -0.41
VPS13A-204ENST00000376634 PPIBP23284 216 aaKnown RBP12.49□□□□□ -0.41
VPS13A-204ENST00000376634 LSM3P62310 102 aaKnown RBP12.49□□□□□ -0.41
VPS13A-204ENST00000376634 C3orf67Q6ZVT6 689 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 PNPLA8Q9NP80 782 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 CPA4Q9UI42 421 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 FAM46CQ5VWP2 391 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 ARCQ7LC44 396 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 APTXQ7Z2E3 356 aaKnown RBP12.49□□□□□ -0.41
VPS13A-204ENST00000376634 SLC5A5Q92911 643 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 ABCG4Q9H172 646 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 SIN3BO75182 1162 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 CYP2C18P33260 490 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 POU5F1Q01860 360 aaKnown RBP12.49□□□□□ -0.41
VPS13A-204ENST00000376634 RRP1BQ14684 758 aaKnown RBP12.49□□□□□ -0.41
VPS13A-204ENST00000376634 PDK3Q15120 406 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 HECTD3Q5T447 861 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 AMIGO1Q86WK6 493 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 HPS1Q92902 700 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 XPR1Q9UBH6 696 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 MLXQ9UH92 298 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 DIP2BQ9P265 1576 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 ARHGEF33A8MVX0 844 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 PLIN3O60664 434 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 PSTKQ8IV42 348 aaKnown RBP12.49□□□□□ -0.41
VPS13A-204ENST00000376634 OR10G6Q8NH81 332 aa12.49□□□□□ -0.41
VPS13A-204ENST00000376634 CLK4Q9HAZ1 481 aaKnown RBP12.49□□□□□ -0.41
VPS13A-204ENST00000376634 CDH4P55283 916 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms