RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 ASB16Q96NS5 453 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 OLFM1Q99784 485 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 IGFLR1Q9H665 355 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 SLC28A3Q9HAS3 691 aa13.82□□□□□ -0.2
PTPRF-202ENST00000372405 POLR3BQ9NW08 1133 aaPredicted RBP13.82□□□□□ -0.2
PTPRF-202ENST00000372405 KIF26AQ9ULI4 1882 aaPredicted RBP13.81□□□□□ -0.2
PTPRF-202ENST00000372405 SPTBN5Q9NRC6 3674 aaKnown RBP13.81□□□□□ -0.2
PTPRF-202ENST00000372405 BIRC5O15392 142 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 CD3EAPO15446 510 aaKnown RBP13.81□□□□□ -0.2
PTPRF-202ENST00000372405 LINC01565O15544 149 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 DNAJC6O75061 913 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 IGSF6O95976 241 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 GSTA1P08263 222 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 ALPIP09923 528 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 CTPS1P17812 591 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 ALDH3A1P30838 453 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 POLD2P49005 469 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 RAB10P61026 200 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 DLG1Q12959 904 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 ITIH4Q14624 930 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 RAB30Q15771 203 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 CHI3L2Q15782 390 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 GEN1Q17RS7 908 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 EML3Q32P44 896 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 FASTKD1Q53R41 847 aaKnown RBP13.81□□□□□ -0.2
PTPRF-202ENST00000372405 ARMC12Q5T9G4 340 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 METTL3Q86U44 580 aaKnown RBP13.81□□□□□ -0.2
PTPRF-202ENST00000372405 NUDCD3Q8IVD9 361 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 TNS4Q8IZW8 715 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 TMEM151AQ8N4L1 468 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 OTUD6BQ8N6M0 293 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 DDX51Q8N8A6 666 aaKnown RBP eCLIP13.81□□□□□ -0.2
PTPRF-202ENST00000372405 OR4L1Q8NH43 312 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 OSCP1Q8WVF1 389 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 ISG20Q96AZ6 181 aaKnown RBP13.81□□□□□ -0.2
PTPRF-202ENST00000372405 ELMO2Q96JJ3 720 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 C20orf27Q9GZN8 174 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 ZNF395Q9H8N7 513 aaPredicted RBP13.81□□□□□ -0.2
PTPRF-202ENST00000372405 DUS2Q9NX74 493 aaKnown RBP13.81□□□□□ -0.2
PTPRF-202ENST00000372405 FBXO10Q9UK96 956 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 MTF2Q9Y483 593 aaPredicted RBP13.81□□□□□ -0.2
PTPRF-202ENST00000372405 UNC80Q8N2C7 3258 aa13.81□□□□□ -0.2
PTPRF-202ENST00000372405 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.8□□□□□ -0.2
PTPRF-202ENST00000372405 C2orf81A6NN90 581 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 SLC9A3R1O14745 358 aaPredicted RBP13.8□□□□□ -0.2
PTPRF-202ENST00000372405 SBK3P0C264 359 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 LPOP22079 712 aaPredicted RBP13.8□□□□□ -0.2
PTPRF-202ENST00000372405 KCNA4P22459 653 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 SP100P23497 879 aaPredicted RBP13.8□□□□□ -0.2
PTPRF-202ENST00000372405 FSHRP23945 695 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 GRIA4P48058 902 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 ECT2LQ008S8 904 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 BCL2L1Q07817 233 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 BST1Q10588 318 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 OVGP1Q12889 678 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 MBLAC2Q68D91 279 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 ZCCHC23Q6ZST2 131 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 RAPH1Q70E73 1250 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 C12orf40Q86WS4 652 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 LMNTD2Q8IXW0 634 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 SORCS1Q8WY21 1168 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 GRAMD1AQ96CP6 724 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 MRPL38Q96DV4 380 aaKnown RBP13.8□□□□□ -0.2
PTPRF-202ENST00000372405 ZFYVE19Q96K21 471 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 GPR78Q96P69 363 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 TSSK1BQ9BXA7 367 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 BPIFA1Q9NP55 256 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 CATSPERZQ9NTU4 200 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 COL4A3Q01955 1670 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 ZNF106Q9H2Y7 1883 aaKnown RBP13.8□□□□□ -0.2
PTPRF-202ENST00000372405 OTOL1A6NHN0 477 aaPredicted RBP13.8□□□□□ -0.2
PTPRF-202ENST00000372405 CCDC85CA6NKD9 419 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 G3V2L1 256 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 SOCS5O75159 536 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 CISD3P0C7P0 127 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 FGF3P11487 239 aaPredicted RBP13.8□□□□□ -0.2
PTPRF-202ENST00000372405 STMN1P16949 149 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 CDKN1CP49918 316 aaPredicted RBP13.8□□□□□ -0.2
PTPRF-202ENST00000372405 CLCN5P51795 746 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 TIAL1Q01085 375 aaKnown RBP eCLIP13.8□□□□□ -0.2
PTPRF-202ENST00000372405 POU4F1Q01851 419 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 MESP2Q0VG99 397 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 HYAL1Q12794 435 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 TYSND1Q2T9J0 566 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 ZNF549Q6P9A3 640 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 SYCE2Q6PIF2 218 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 LYSMD3Q7Z3D4 306 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 GPR149Q86SP6 731 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 SPATS2Q86XZ4 545 aaKnown RBP13.8□□□□□ -0.2
PTPRF-202ENST00000372405 KCTD4Q8WVF5 259 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 SMARCD2Q92925 531 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 E2F7Q96AV8 911 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 CDCA3Q99618 268 aaPredicted RBP13.8□□□□□ -0.2
PTPRF-202ENST00000372405 MAGEE1Q9HCI5 957 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 DZANK1Q9NVP4 752 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 CAMSAP3Q9P1Y5 1249 aaPredicted RBP13.8□□□□□ -0.2
PTPRF-202ENST00000372405 COPG2Q9UBF2 871 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 FKBPLQ9UIM3 349 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 ANKRD6Q9Y2G4 727 aa13.8□□□□□ -0.2
PTPRF-202ENST00000372405 CRYL1Q9Y2S2 319 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms