RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 MRPL40Q9NQ50 206 aaKnown RBP13.9□□□□□ -0.18
VPS29-201ENST00000360579 DONSONQ9NYP3 566 aa13.9□□□□□ -0.18
VPS29-201ENST00000360579 LHX3Q9UBR4 397 aa13.9□□□□□ -0.18
VPS29-201ENST00000360579 UBA2Q9UBT2 640 aaPredicted RBP13.9□□□□□ -0.18
VPS29-201ENST00000360579 MOSPD1Q9UJG1 213 aa13.9□□□□□ -0.18
VPS29-201ENST00000360579 CHD5Q8TDI0 1954 aa13.9□□□□□ -0.18
VPS29-201ENST00000360579 LRP4O75096 1905 aa13.9□□□□□ -0.18
VPS29-201ENST00000360579 PRSS38A1L453 326 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 C2CD4BA6NLJ0 364 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 RASA4BC9J798 803 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 RASA4O43374 803 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 RECQL5O94762 991 aaPredicted RBP13.89□□□□□ -0.19
VPS29-201ENST00000360579 ELFN1P0C7U0 828 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 FGF3P11487 239 aaPredicted RBP13.89□□□□□ -0.19
VPS29-201ENST00000360579 CCNB1P14635 433 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 SERPINA4P29622 427 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 CSTF2P33240 577 aaKnown RBP eCLIP13.89□□□□□ -0.19
VPS29-201ENST00000360579 LIMK2P53671 638 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 RAB15P59190 212 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 POLR2LP62875 67 aaKnown RBP13.89□□□□□ -0.19
VPS29-201ENST00000360579 ILF3Q12906 894 aaKnown RBP eCLIP13.89□□□□□ -0.19
VPS29-201ENST00000360579 CYTH1Q15438 398 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 IGFBP7Q16270 282 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 MAN2A1Q16706 1144 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 NAA35Q5VZE5 725 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 SLFN11Q7Z7L1 901 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 ZNF677Q86XU0 584 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 SFTPA2Q8IWL1 248 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 CCDC185Q8N715 623 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 NETO2Q8NC67 525 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 OR4D9Q8NGE8 314 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 ZDHHC1Q8WTX9 485 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 FAM172AQ8WUF8 416 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 CENPIQ92674 756 aaPredicted RBP13.89□□□□□ -0.19
VPS29-201ENST00000360579 KIAA1143Q96AT1 154 aaPredicted RBP13.89□□□□□ -0.19
VPS29-201ENST00000360579 CCDC74BQ96LY2 380 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 NUDT22Q9BRQ3 303 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 EFHD1Q9BUP0 239 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 NOL6Q9H6R4 1146 aaKnown RBP13.89□□□□□ -0.19
VPS29-201ENST00000360579 ATP13A3Q9H7F0 1226 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 CATSPERBQ9H7T0 1116 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 MAN2B2Q9Y2E5 1009 aa13.89□□□□□ -0.19
VPS29-201ENST00000360579 NBASA2RRP1 2371 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 FAM170AA1A519 330 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 B4E171 279 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 MMP8P22894 467 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 CD1CP29017 333 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 TSPAN7P41732 249 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 CSNK1DP48730 415 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 ARSDP51689 593 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 MAZP56270 477 aaKnown RBP13.88□□□□□ -0.19
VPS29-201ENST00000360579 HDAC4P56524 1084 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 SQSTM1Q13501 440 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 RAB6CQ53S08 254 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 DCAF12Q5T6F0 453 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 NOP9Q86U38 636 aaKnown RBP13.88□□□□□ -0.19
VPS29-201ENST00000360579 CAMK1DQ8IU85 385 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 FAM114A1Q8IWE2 563 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 UMODL1-AS1Q8N2C9 162 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 PAF1Q8N7H5 531 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 CCL4L1Q8NHW4 92 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 GPT2Q8TD30 523 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 ART4Q93070 314 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 SLC45A3Q96JT2 553 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 TEFMQ96QE5 360 aaKnown RBP13.88□□□□□ -0.19
VPS29-201ENST00000360579 KLC2Q9H0B6 622 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 RAB6CQ9H0N0 254 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 CARS2Q9HA77 564 aaKnown RBP13.88□□□□□ -0.19
VPS29-201ENST00000360579 SPATS2LQ9NUQ6 558 aaKnown RBP13.88□□□□□ -0.19
VPS29-201ENST00000360579 TRNAU1APQ9NX07 287 aaKnown RBP13.88□□□□□ -0.19
VPS29-201ENST00000360579 KCTD5Q9NXV2 234 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 SLC39A1Q9NY26 324 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 B3GALT1Q9Y5Z6 326 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 NOTCH2Q04721 2471 aa13.88□□□□□ -0.19
VPS29-201ENST00000360579 SPTAN1Q13813 2472 aaKnown RBP13.88□□□□□ -0.19
VPS29-201ENST00000360579 MYO9AB2RTY4 2548 aa13.87□□□□□ -0.19
VPS29-201ENST00000360579 SPENQ96T58 3664 aaKnown RBP13.87□□□□□ -0.19
VPS29-201ENST00000360579 WASH4PA8MWX3 477 aa13.87□□□□□ -0.19
VPS29-201ENST00000360579 FGF10O15520 208 aaPredicted RBP13.87□□□□□ -0.19
VPS29-201ENST00000360579 BUB1BO60566 1050 aaPredicted RBP13.87□□□□□ -0.19
VPS29-201ENST00000360579 RAD1O60671 282 aa13.87□□□□□ -0.19
VPS29-201ENST00000360579 FGF1P05230 155 aa13.87□□□□□ -0.19
VPS29-201ENST00000360579 MMEP08473 750 aa13.87□□□□□ -0.19
VPS29-201ENST00000360579 MYCLP1P12525 358 aaPredicted RBP13.87□□□□□ -0.19
VPS29-201ENST00000360579 MAN1A1P33908 653 aa13.87□□□□□ -0.19
VPS29-201ENST00000360579 TPD52L1Q16890 204 aaPredicted RBP13.87□□□□□ -0.19
VPS29-201ENST00000360579 C4orf17Q53FE4 359 aa13.87□□□□□ -0.19
VPS29-201ENST00000360579 KLHDC7AQ5VTJ3 777 aa13.87□□□□□ -0.19
VPS29-201ENST00000360579 AFMIDQ63HM1 303 aa13.87□□□□□ -0.19
VPS29-201ENST00000360579 PNCKQ6P2M8 343 aa13.87□□□□□ -0.19
VPS29-201ENST00000360579 LIPIQ6XZB0 460 aa13.87□□□□□ -0.19
VPS29-201ENST00000360579 ZSWIM9Q86XI8 627 aa13.87□□□□□ -0.19
VPS29-201ENST00000360579 EPS8L1Q8TE68 723 aa13.87□□□□□ -0.19
VPS29-201ENST00000360579 PMEPA1Q969W9 287 aa13.87□□□□□ -0.19
VPS29-201ENST00000360579 PSMG3-AS1Q96PY0 264 aa13.87□□□□□ -0.19
VPS29-201ENST00000360579 LGR4Q9BXB1 951 aa13.87□□□□□ -0.19
VPS29-201ENST00000360579 MAGEB5Q9BZ81 275 aa13.87□□□□□ -0.19
VPS29-201ENST00000360579 NDST4Q9H3R1 872 aa13.87□□□□□ -0.19
VPS29-201ENST00000360579 GPN2Q9H9Y4 310 aaPredicted RBP13.87□□□□□ -0.19
VPS29-201ENST00000360579 PHPT1Q9NRX4 125 aaPredicted RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms