RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 HSPBAP1Q96EW2 488 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 SEPHS2Q99611 448 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 SLC25A23Q9BV35 468 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 RAD54BQ9Y620 910 aa12.17□□□□□ -0.46
CLIP3-201ENST00000360535 TMX2-CTNND1H3BSU7 103 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 M0QZ92 97 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 INPP4BO15327 924 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 HTRA2O43464 458 aaPredicted RBP12.16□□□□□ -0.46
CLIP3-201ENST00000360535 H6PDO95479 791 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 HSPA8P11142 646 aaKnown RBP12.16□□□□□ -0.46
CLIP3-201ENST00000360535 CDK4P11802 303 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 CDH2P19022 906 aaPredicted RBP12.16□□□□□ -0.46
CLIP3-201ENST00000360535 YAP1P46937 504 aaKnown RBP12.16□□□□□ -0.46
CLIP3-201ENST00000360535 SERPINH1P50454 418 aaKnown RBP12.16□□□□□ -0.46
CLIP3-201ENST00000360535 AIF1P55008 147 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 PRKCQQ04759 706 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 SAMD4BQ5PRF9 694 aaKnown RBP12.16□□□□□ -0.46
CLIP3-201ENST00000360535 PELI3Q8N2H9 469 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 DTNBP1Q96EV8 351 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 HAUS8Q9BT25 410 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 SP110Q9HB58 689 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 UXTQ9UBK9 157 aaPredicted RBP12.16□□□□□ -0.46
CLIP3-201ENST00000360535 RSL24D1Q9UHA3 163 aaKnown RBP12.16□□□□□ -0.46
CLIP3-201ENST00000360535 VPS28Q9UK41 221 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 CDH9Q9ULB4 789 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 RBM47A0AV96 593 aaKnown RBP12.16□□□□□ -0.46
CLIP3-201ENST00000360535 E9PAM4 449 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 AP3B1O00203 1094 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 PIP5K1BO14986 540 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 CNTN5O94779 1100 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 TBX18O95935 607 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 ITGB1P05556 798 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 HAPLN1P10915 354 aaPredicted RBP12.16□□□□□ -0.46
CLIP3-201ENST00000360535 CRYBB1P53674 252 aaPredicted RBP12.16□□□□□ -0.46
CLIP3-201ENST00000360535 ARPP19P56211 112 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 SH3BP2P78314 561 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 CDC42EP1Q00587 391 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 GALNT3Q14435 633 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 PLEKHH3Q7Z736 793 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 METTL23Q86XA0 190 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 DRAXINQ8NBI3 349 aaPredicted RBP12.16□□□□□ -0.46
CLIP3-201ENST00000360535 MIPOL1Q8TD10 442 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 PSMG2Q969U7 264 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 PTERQ96BW5 349 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 SUCOQ9UBS9 1254 aaKnown RBP12.16□□□□□ -0.46
CLIP3-201ENST00000360535 CEPT1Q9Y6K0 416 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 MYLKQ15746 1914 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 SUPT3HO75486 399 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 RBP1P09455 135 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 PIM1P11309 404 aaPredicted RBP12.16□□□□□ -0.46
CLIP3-201ENST00000360535 ADSLP30566 484 aaPredicted RBP12.16□□□□□ -0.46
CLIP3-201ENST00000360535 SLC5A3P53794 718 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 SMYD5Q6GMV2 418 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 RANBP10Q6VN20 620 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 FUNDC1Q8IVP5 155 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 CHERPQ8IWX8 916 aaKnown RBP12.16□□□□□ -0.46
CLIP3-201ENST00000360535 OR10T2Q8NGX3 314 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 HMCESQ96FZ2 354 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 MAELQ96JY0 434 aaKnown RBP12.16□□□□□ -0.46
CLIP3-201ENST00000360535 HBEGFQ99075 208 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 AP5M1Q9H0R1 490 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 NMUR1Q9HB89 426 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 TDRKHQ9Y2W6 561 aaKnown RBP12.16□□□□□ -0.46
CLIP3-201ENST00000360535 GTF3C5Q9Y5Q8 519 aaPredicted RBP12.16□□□□□ -0.46
CLIP3-201ENST00000360535 ARL5AQ9Y689 179 aa12.16□□□□□ -0.46
CLIP3-201ENST00000360535 A0A1W2PQH9 124 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 IRAK2O43187 625 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 HGFP14210 728 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 ADARP55265 1226 aaKnown RBP12.15□□□□□ -0.46
CLIP3-201ENST00000360535 HPCAP84074 193 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 PFKPQ01813 784 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 RFTN1Q14699 578 aaPredicted RBP12.15□□□□□ -0.46
CLIP3-201ENST00000360535 PLCL1Q15111 1095 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 DDR2Q16832 855 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 TMEM259Q4ZIN3 620 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 RAB41Q5JT25 222 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 C6orf10Q5SRN2 563 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 MARC1Q5VT66 337 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 CYP2S1Q96SQ9 504 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 IL12RB2Q99665 862 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 C1orf50Q9BV19 199 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 OSBPL11Q9BXB4 747 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 RBM38Q9H0Z9 239 aaKnown RBP12.15□□□□□ -0.46
CLIP3-201ENST00000360535 GSTO2Q9H4Y5 243 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 TREX1Q9NSU2 369 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 HS3ST4Q9Y661 456 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 PDCD11Q14690 1871 aaKnown RBP12.15□□□□□ -0.46
CLIP3-201ENST00000360535 SUPT3HB4E1H0 165 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 NME4O00746 187 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 SLC7A1P30825 629 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 GPR15P49685 360 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 HK2P52789 917 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 PLA2G4EQ3MJ16 856 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 RABL3Q5HYI8 236 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 KIAA0930Q6ICG6 404 aaPredicted RBP12.15□□□□□ -0.46
CLIP3-201ENST00000360535 LCA5Q86VQ0 697 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 OR13C4Q8NGS5 318 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 BRI3BPQ8WY22 251 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 FBXL20Q96IG2 436 aa12.15□□□□□ -0.46
CLIP3-201ENST00000360535 RTP3Q9BQQ7 232 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms