RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 MCCC1Q96RQ3 725 aaPredicted RBP19.94■□□□□ 0.78
CLN3-205ENST00000359984 SH3GL2Q99962 352 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 VPS18Q9P253 973 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 NPIPB15A6NHN6 443 aaPredicted RBP19.94■□□□□ 0.78
CLN3-205ENST00000359984 C2orf81A6NN90 581 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 C16orf96A6NNT2 1141 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 CCL22O00626 93 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 SYNCRIPO60506 623 aaKnown RBP19.94■□□□□ 0.78
CLN3-205ENST00000359984 ADAM23O75077 832 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 VAPBO95292 243 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 IL1BP01584 269 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 SLC4A1P02730 911 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 IVLP07476 585 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 ARCN1P48444 511 aaKnown RBP19.94■□□□□ 0.78
CLN3-205ENST00000359984 ARSDP51689 593 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 SEMG2Q02383 582 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 ACVR1Q04771 509 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 KRT71Q3SY84 523 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 FBXO43Q4G163 708 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 LRRC73Q5JTD7 316 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 KIAA0930Q6ICG6 404 aaPredicted RBP19.94■□□□□ 0.78
CLN3-205ENST00000359984 SDE2Q6IQ49 451 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 MICALCLQ6ZW33 695 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 USP45Q70EL2 814 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 LYSMD3Q7Z3D4 306 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 DSG4Q86SJ6 1040 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 TXNDC5Q8NBS9 432 aaKnown RBP19.94■□□□□ 0.78
CLN3-205ENST00000359984 OR13C4Q8NGS5 318 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 PEX13Q92968 403 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 ARRDC3Q96B67 414 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 EID2BQ96D98 161 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 MRRFQ96E11 262 aaKnown RBP19.94■□□□□ 0.78
CLN3-205ENST00000359984 LYSMD1Q96S90 227 aa19.94■□□□□ 0.78
CLN3-205ENST00000359984 C20orf96Q9NUD7 363 aaPredicted RBP19.94■□□□□ 0.78
CLN3-205ENST00000359984 NDRG2Q9UN36 371 aaKnown RBP19.94■□□□□ 0.78
CLN3-205ENST00000359984 A8MX80 341 aa19.93■□□□□ 0.78
CLN3-205ENST00000359984 RNF40O75150 1001 aa19.93■□□□□ 0.78
CLN3-205ENST00000359984 PAMP19021 973 aa19.93■□□□□ 0.78
CLN3-205ENST00000359984 LPOP22079 712 aaPredicted RBP19.93■□□□□ 0.78
CLN3-205ENST00000359984 TMPRSS15P98073 1019 aa19.93■□□□□ 0.78
CLN3-205ENST00000359984 SKIDA1Q1XH10 827 aa19.93■□□□□ 0.78
CLN3-205ENST00000359984 KIAA1211LQ6NV74 962 aa19.93■□□□□ 0.78
CLN3-205ENST00000359984 ZNF449Q6P9G9 518 aa19.93■□□□□ 0.78
CLN3-205ENST00000359984 CRTC1Q6UUV9 634 aa19.93■□□□□ 0.78
CLN3-205ENST00000359984 ZNF852Q6ZMS4 543 aa19.93■□□□□ 0.78
CLN3-205ENST00000359984 PARS2Q7L3T8 475 aaKnown RBP19.93■□□□□ 0.78
CLN3-205ENST00000359984 TTC7BQ86TV6 843 aa19.93■□□□□ 0.78
CLN3-205ENST00000359984 CTAGE3PQ8IX95 158 aa19.93■□□□□ 0.78
CLN3-205ENST00000359984 PPM1NQ8N819 430 aa19.93■□□□□ 0.78
CLN3-205ENST00000359984 OR4K2Q8NGD2 314 aa19.93■□□□□ 0.78
CLN3-205ENST00000359984 SRPK1Q96SB4 655 aaKnown RBP19.93■□□□□ 0.78
CLN3-205ENST00000359984 GPR63Q9BZJ6 419 aa19.93■□□□□ 0.78
CLN3-205ENST00000359984 ARHGEF3Q9NR81 526 aa19.93■□□□□ 0.78
CLN3-205ENST00000359984 NLE1Q9NVX2 485 aaPredicted RBP19.93■□□□□ 0.78
CLN3-205ENST00000359984 FETUBQ9UGM5 382 aa19.93■□□□□ 0.78
CLN3-205ENST00000359984 C1orf232A0A0U1RR37 186 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 UPK3BL1B0FP48 263 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 GOLGA8KD6RF30 607 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 UPK3BL2E5RIL1 263 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 GOLGA8TH3BQL2 631 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 PSMA3P25788 255 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 ITGB7P26010 798 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 HSP90AA5PQ58FG0 334 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 PDPK2PQ6A1A2 396 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 TRMT11Q7Z4G4 463 aaKnown RBP19.92■□□□□ 0.78
CLN3-205ENST00000359984 TSPAN33Q86UF1 283 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 KCNMB4Q86W47 210 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 HDAC10Q969S8 669 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 PAFAH2Q99487 392 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 DHRS4Q9BTZ2 278 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 RSPH9Q9H1X1 276 aaPredicted RBP19.92■□□□□ 0.78
CLN3-205ENST00000359984 PCDH12Q9NPG4 1184 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 POLR3BQ9NW08 1133 aaPredicted RBP19.92■□□□□ 0.78
CLN3-205ENST00000359984 SLC17A6Q9P2U8 582 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 SLC24A2Q9UI40 661 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 ATG2BQ96BY7 2078 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 OPA1O60313 960 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 CLDN7O95471 211 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 SYF2O95926 243 aaKnown RBP19.92■□□□□ 0.78
CLN3-205ENST00000359984 PSMD8P48556 350 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 PDE1BQ01064 536 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 PRKCQQ04759 706 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 GPS2Q13227 327 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 RASSF3Q86WH2 238 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 LRRC6Q86X45 466 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 SLC44A1Q8WWI5 657 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 TBATAQ96M53 351 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 ZFYVE1Q9HBF4 777 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 IL17CQ9P0M4 197 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 CTNNAL1Q9UBT7 734 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 WNT16Q9UBV4 365 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 B4GALT6Q9UBX8 382 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 GGT7Q9UJ14 662 aa19.92■□□□□ 0.78
CLN3-205ENST00000359984 A0A1W2PQF6 199 aa19.91■□□□□ 0.78
CLN3-205ENST00000359984 KRBA1A5PL33 1030 aa19.91■□□□□ 0.78
CLN3-205ENST00000359984 C1QTNF3-AMACRE9PGA6 284 aa19.91■□□□□ 0.78
CLN3-205ENST00000359984 UGT1A9O60656 530 aa19.91■□□□□ 0.78
CLN3-205ENST00000359984 RPP40O75818 363 aaKnown RBP19.91■□□□□ 0.78
CLN3-205ENST00000359984 MYZAPP0CAP1 466 aa19.91■□□□□ 0.78
CLN3-205ENST00000359984 HOXB2P14652 356 aa19.91■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms