RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 PIRTP0C851 137 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 RAG1P15918 1043 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 HOXD9P28356 352 aaPredicted RBP20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 C1QTNF8P60827 252 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 MTA1Q13330 715 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 LAMB3Q13751 1172 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 SEMA3AQ14563 771 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 ZNF423Q2M1K9 1284 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 ALG1LQ6GMV1 187 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 OR52K2Q8NGK3 314 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 OR13C4Q8NGS5 318 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 HHIPL1Q96JK4 782 aa20.88■□□□□ 0.93
CCDC88B-203ENST00000359902 H7C4K7 107 aa20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 GALTP07902 379 aa20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 LINGO3P0C6S8 592 aa20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 FDXRP22570 491 aa20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 THOP1P52888 689 aa20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 LPCAT4Q643R3 524 aa20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 PRSS55Q6UWB4 352 aaPredicted RBP20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 TTLL2Q9BWV7 592 aa20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 WDR41Q9HAD4 459 aa20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 UBFD1O14562 309 aaKnown RBP20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 ACSL4O60488 711 aa20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 AOC2O75106 756 aa20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 RPP40O75818 363 aaKnown RBP20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 SLC4A1P02730 911 aa20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 SERPINF2P08697 491 aa20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 HSPA1AP0DMV8 641 aaKnown RBP20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 HSPA1BP0DMV9 641 aaKnown RBP20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 ENO3P13929 434 aaPredicted RBP20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 DPP6P42658 865 aa20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 GNA12Q03113 381 aa20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 LRRC36Q1X8D7 754 aa20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 ANKS3Q6ZW76 656 aa20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 OR7D4Q8NG98 312 aa20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 C2orf15Q8WU43 125 aaKnown RBP20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 PTERQ96BW5 349 aa20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 TRIB3Q96RU7 358 aa20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 MAGEH1Q9H213 219 aa20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 DLGAP2Q9P1A6 1054 aa20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 DNMT3LQ9UJW3 386 aa20.87■□□□□ 0.93
CCDC88B-203ENST00000359902 CFLARO15519 480 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 PENKP01210 267 aaPredicted RBP20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 ARSAP15289 507 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 PAX7P23759 505 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 ELAVL2Q12926 359 aaKnown RBP20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 ART3Q13508 389 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 CEACAM7Q14002 265 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 GSTA3Q16772 222 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 MRNIPQ6NTE8 343 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 PDSS2Q86YH6 399 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 AFAP1L2Q8N4X5 818 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 CD99L2Q8TCZ2 262 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 L3HYPDHQ96EM0 354 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 TTPALQ9BTX7 342 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 LRFN2Q9ULH4 789 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 ZFP37Q9Y6Q3 630 aaPredicted RBP20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 XRCC1P18887 633 aaPredicted RBP20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 HOXD10P28358 340 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 ATP5C1P36542 298 aaKnown RBP20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 PKNOX1P55347 436 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 RFTN1Q14699 578 aaPredicted RBP20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 TCTN1Q2MV58 587 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 ZNF678Q5SXM1 525 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 RAET1EQ8TD07 263 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 GDPD5Q8WTR4 605 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 BCL7CQ8WUZ0 217 aaPredicted RBP20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 NSMCE3Q96MG7 304 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 NR1H4Q96RI1 486 aaPredicted RBP20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 NPAS2Q99743 824 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 MGME1Q9BQP7 344 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 TRMOQ9BU70 441 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 POLR3BQ9NW08 1133 aaPredicted RBP20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 ZDHHC7Q9NXF8 308 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 RIMKLBQ9ULI2 386 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 TRAF6Q9Y4K3 522 aa20.86■□□□□ 0.93
CCDC88B-203ENST00000359902 MAGEA13PA6NCF6 341 aa20.85■□□□□ 0.93
CCDC88B-203ENST00000359902 H3BNC9 293 aa20.85■□□□□ 0.93
CCDC88B-203ENST00000359902 ADAM12O43184 909 aa20.85■□□□□ 0.93
CCDC88B-203ENST00000359902 NDST3O95803 873 aa20.85■□□□□ 0.93
CCDC88B-203ENST00000359902 CD1DP15813 335 aa20.85■□□□□ 0.93
CCDC88B-203ENST00000359902 ILF2Q12905 390 aaKnown RBP20.85■□□□□ 0.93
CCDC88B-203ENST00000359902 SFT2D3Q587I9 215 aa20.85■□□□□ 0.93
CCDC88B-203ENST00000359902 IL31Q6EBC2 164 aa20.85■□□□□ 0.93
CCDC88B-203ENST00000359902 SDCCAG8Q86SQ7 713 aaPredicted RBP20.85■□□□□ 0.93
CCDC88B-203ENST00000359902 CRIPAKQ8N1N5 446 aa20.85■□□□□ 0.93
CCDC88B-203ENST00000359902 OR4L1Q8NH43 312 aa20.85■□□□□ 0.93
CCDC88B-203ENST00000359902 HMGCLL1Q8TB92 370 aa20.85■□□□□ 0.93
CCDC88B-203ENST00000359902 KLHL4Q9C0H6 718 aa20.85■□□□□ 0.93
CCDC88B-203ENST00000359902 VCXQ9H320 206 aa20.85■□□□□ 0.93
CCDC88B-203ENST00000359902 SCOCQ9UIL1 159 aa20.85■□□□□ 0.93
CCDC88B-203ENST00000359902 CHD5Q8TDI0 1954 aa20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 STX16-NPEPL1H3BU86 382 aa20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 TRPA1O75762 1119 aa20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 PEX2P28328 305 aa20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 MSX2P35548 267 aaPredicted RBP20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 SUOXP51687 545 aa20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 INHBCP55103 352 aa20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 PPP1R3AQ16821 1122 aa20.84■□□□□ 0.93
CCDC88B-203ENST00000359902 UNC50Q53HI1 259 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms