RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 TUBB2AQ13885 445 aa22.21■■□□□ 1.15
SHMT1-203ENST00000354098 CDKN3Q16667 212 aa22.21■■□□□ 1.15
SHMT1-203ENST00000354098 LYSMD4Q5XG99 296 aa22.21■■□□□ 1.15
SHMT1-203ENST00000354098 LRRC66Q68CR7 880 aa22.21■■□□□ 1.15
SHMT1-203ENST00000354098 DENND2CQ68D51 928 aa22.21■■□□□ 1.15
SHMT1-203ENST00000354098 LYSMD1Q96S90 227 aa22.21■■□□□ 1.15
SHMT1-203ENST00000354098 TUBB2BQ9BVA1 445 aa22.21■■□□□ 1.15
SHMT1-203ENST00000354098 C1QTNF2Q9BXJ5 285 aa22.21■■□□□ 1.15
SHMT1-203ENST00000354098 SLC17A9Q9BYT1 436 aa22.21■■□□□ 1.15
SHMT1-203ENST00000354098 PIH1D1Q9NWS0 290 aaKnown RBP22.21■■□□□ 1.15
SHMT1-203ENST00000354098 CEP192Q8TEP8 1941 aa22.21■■□□□ 1.15
SHMT1-203ENST00000354098 ATXN2Q99700 1313 aaKnown RBP22.21■■□□□ 1.15
SHMT1-203ENST00000354098 SLC31A1O15431 190 aa22.2■■□□□ 1.15
SHMT1-203ENST00000354098 PSMD3O43242 534 aa22.2■■□□□ 1.15
SHMT1-203ENST00000354098 CLDN7O95471 211 aa22.2■■□□□ 1.15
SHMT1-203ENST00000354098 ELFN1P0C7U0 828 aa22.2■■□□□ 1.15
SHMT1-203ENST00000354098 GM2AP17900 193 aa22.2■■□□□ 1.15
SHMT1-203ENST00000354098 NFKBIAP25963 317 aa22.2■■□□□ 1.15
SHMT1-203ENST00000354098 PTSQ03393 145 aa22.2■■□□□ 1.15
SHMT1-203ENST00000354098 PTK6Q13882 451 aa22.2■■□□□ 1.15
SHMT1-203ENST00000354098 JAMLQ86YT9 394 aa22.2■■□□□ 1.15
SHMT1-203ENST00000354098 RGL4Q8IZJ4 473 aa22.2■■□□□ 1.15
SHMT1-203ENST00000354098 RUNDC3BQ96NL0 473 aa22.2■■□□□ 1.15
SHMT1-203ENST00000354098 PHOX2BQ99453 314 aa22.2■■□□□ 1.15
SHMT1-203ENST00000354098 TRIM51Q9BSJ1 452 aa22.2■■□□□ 1.15
SHMT1-203ENST00000354098 TMEM74BQ9NUR3 256 aa22.2■■□□□ 1.15
SHMT1-203ENST00000354098 SHOC2Q9UQ13 582 aa22.2■■□□□ 1.15
SHMT1-203ENST00000354098 SDK1Q7Z5N4 2213 aa22.2■■□□□ 1.14
SHMT1-203ENST00000354098 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP22.2■■□□□ 1.14
SHMT1-203ENST00000354098 A0A1W2PPC4 97 aa22.2■■□□□ 1.14
SHMT1-203ENST00000354098 TCRBV7S3A2A0A539 114 aa22.2■■□□□ 1.14
SHMT1-203ENST00000354098 ERI2A8K979 691 aaKnown RBP22.2■■□□□ 1.14
SHMT1-203ENST00000354098 TM7SF2O76062 418 aa22.2■■□□□ 1.14
SHMT1-203ENST00000354098 FGF1P05230 155 aa22.2■■□□□ 1.14
SHMT1-203ENST00000354098 ARHGEF7Q14155 803 aa22.2■■□□□ 1.14
SHMT1-203ENST00000354098 LYSMD3Q7Z3D4 306 aa22.2■■□□□ 1.14
SHMT1-203ENST00000354098 HSD11B1LQ7Z5J1 315 aa22.2■■□□□ 1.14
SHMT1-203ENST00000354098 CBARPQ8N350 705 aaPredicted RBP22.2■■□□□ 1.14
SHMT1-203ENST00000354098 DNASE2BQ8WZ79 361 aa22.2■■□□□ 1.14
SHMT1-203ENST00000354098 EID2BQ96D98 161 aa22.2■■□□□ 1.14
SHMT1-203ENST00000354098 MIR1-1HGQ9H1L0 117 aa22.2■■□□□ 1.14
SHMT1-203ENST00000354098 ARNT2Q9HBZ2 717 aa22.2■■□□□ 1.14
SHMT1-203ENST00000354098 MAGEE1Q9HCI5 957 aa22.2■■□□□ 1.14
SHMT1-203ENST00000354098 FZD3Q9NPG1 666 aa22.2■■□□□ 1.14
SHMT1-203ENST00000354098 RAB23Q9ULC3 237 aa22.2■■□□□ 1.14
SHMT1-203ENST00000354098 C1orf232A0A0U1RR37 186 aa22.19■■□□□ 1.14
SHMT1-203ENST00000354098 WNT9AO14904 365 aa22.19■■□□□ 1.14
SHMT1-203ENST00000354098 AURKAO14965 403 aa22.19■■□□□ 1.14
SHMT1-203ENST00000354098 SUN1O94901 812 aa22.19■■□□□ 1.14
SHMT1-203ENST00000354098 NHLH1Q02575 133 aa22.19■■□□□ 1.14
SHMT1-203ENST00000354098 MSLNQ13421 630 aaPredicted RBP22.19■■□□□ 1.14
SHMT1-203ENST00000354098 DHX34Q14147 1143 aaKnown RBP22.19■■□□□ 1.14
SHMT1-203ENST00000354098 NAPEPLDQ6IQ20 393 aa22.19■■□□□ 1.14
SHMT1-203ENST00000354098 OR52K1Q8NGK4 314 aa22.19■■□□□ 1.14
SHMT1-203ENST00000354098 CPT1BQ92523 772 aa22.19■■□□□ 1.14
SHMT1-203ENST00000354098 MYOCQ99972 504 aa22.19■■□□□ 1.14
SHMT1-203ENST00000354098 ASIC3Q9UHC3 531 aa22.19■■□□□ 1.14
SHMT1-203ENST00000354098 DOCK9Q9BZ29 2069 aa22.18■■□□□ 1.14
SHMT1-203ENST00000354098 RAD51BO15315 384 aa22.18■■□□□ 1.14
SHMT1-203ENST00000354098 LZTS3O60299 673 aaPredicted RBP22.18■■□□□ 1.14
SHMT1-203ENST00000354098 TPH1P17752 444 aa22.18■■□□□ 1.14
SHMT1-203ENST00000354098 CD27P26842 260 aa22.18■■□□□ 1.14
SHMT1-203ENST00000354098 ADCY8P40145 1251 aa22.18■■□□□ 1.14
SHMT1-203ENST00000354098 CREB5Q02930 508 aa22.18■■□□□ 1.14
SHMT1-203ENST00000354098 SGCGQ13326 291 aa22.18■■□□□ 1.14
SHMT1-203ENST00000354098 ACOX1Q15067 660 aa22.18■■□□□ 1.14
SHMT1-203ENST00000354098 SETMARQ53H47 684 aaPredicted RBP22.18■■□□□ 1.14
SHMT1-203ENST00000354098 WDR45BQ5MNZ6 344 aa22.18■■□□□ 1.14
SHMT1-203ENST00000354098 ANKRD22Q5VYY1 191 aa22.18■■□□□ 1.14
SHMT1-203ENST00000354098 RFLNAQ6ZTI6 216 aa22.18■■□□□ 1.14
SHMT1-203ENST00000354098 C1orf216Q8TAB5 229 aa22.18■■□□□ 1.14
SHMT1-203ENST00000354098 BLOC1S5Q8TDH9 187 aa22.18■■□□□ 1.14
SHMT1-203ENST00000354098 PIGKQ92643 395 aa22.18■■□□□ 1.14
SHMT1-203ENST00000354098 CA5BQ9Y2D0 317 aa22.18■■□□□ 1.14
SHMT1-203ENST00000354098 ZNF711Q9Y462 761 aa22.18■■□□□ 1.14
SHMT1-203ENST00000354098 SPAG17Q6Q759 2223 aa22.18■■□□□ 1.14
SHMT1-203ENST00000354098 RAD51CO43502 376 aa22.17■■□□□ 1.14
SHMT1-203ENST00000354098 RECQL5O94762 991 aaPredicted RBP22.17■■□□□ 1.14
SHMT1-203ENST00000354098 C1SP09871 688 aa22.17■■□□□ 1.14
SHMT1-203ENST00000354098 KCNJ11Q14654 390 aa22.17■■□□□ 1.14
SHMT1-203ENST00000354098 SYDE1Q6ZW31 735 aaPredicted RBP22.17■■□□□ 1.14
SHMT1-203ENST00000354098 LRRC45Q96CN5 670 aa22.17■■□□□ 1.14
SHMT1-203ENST00000354098 COQ10AQ96MF6 247 aa22.17■■□□□ 1.14
SHMT1-203ENST00000354098 KLF6Q99612 283 aaPredicted RBP22.17■■□□□ 1.14
SHMT1-203ENST00000354098 ZFYVE1Q9HBF4 777 aa22.17■■□□□ 1.14
SHMT1-203ENST00000354098 EIF2B3Q9NR50 452 aaKnown RBP22.17■■□□□ 1.14
SHMT1-203ENST00000354098 PILRBQ9UKJ0 227 aa22.17■■□□□ 1.14
SHMT1-203ENST00000354098 TRPM6Q9BX84 2022 aa22.17■■□□□ 1.14
SHMT1-203ENST00000354098 SLC4A1P02730 911 aa22.17■■□□□ 1.14
SHMT1-203ENST00000354098 ZNF30P17039 623 aa22.17■■□□□ 1.14
SHMT1-203ENST00000354098 IVDP26440 423 aa22.17■■□□□ 1.14
SHMT1-203ENST00000354098 ETV3P41162 512 aa22.17■■□□□ 1.14
SHMT1-203ENST00000354098 DNTTIP2Q5QJE6 756 aaKnown RBP22.17■■□□□ 1.14
SHMT1-203ENST00000354098 LAIR1Q6GTX8 287 aa22.17■■□□□ 1.14
SHMT1-203ENST00000354098 KDM7AQ6ZMT4 941 aa22.17■■□□□ 1.14
SHMT1-203ENST00000354098 Q6ZVL8 140 aa22.17■■□□□ 1.14
SHMT1-203ENST00000354098 CYP2U1Q7Z449 544 aa22.17■■□□□ 1.14
SHMT1-203ENST00000354098 LINC00523Q86TU6 105 aa22.17■■□□□ 1.14
SHMT1-203ENST00000354098 SERAC1Q96JX3 654 aa22.17■■□□□ 1.14
SHMT1-203ENST00000354098 SEMA4AQ9H3S1 761 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms