RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 MSH4O15457 936 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 TBX1O43435 398 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 COQ9O75208 318 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 RASGRP1O95267 797 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 CDH1P12830 882 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 EIF4BP23588 611 aaKnown RBP12.63□□□□□ -0.39
COL6A3-203ENST00000353578 CXCR2P25025 360 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 CTSKP43235 329 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 SCNN1DP51172 638 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 OXCT1P55809 520 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 MTMR9Q96QG7 549 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 CCDC106Q9BWC9 280 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 EBF3Q9H4W6 596 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 OVOS2A0A0J9YW53 1432 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 OVOS2Q6IE36 1432 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 HUNKP57058 714 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 DCDC1P59894 354 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 ZYXQ15942 572 aaKnown RBP12.63□□□□□ -0.39
COL6A3-203ENST00000353578 VMP1Q96GC9 406 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 ACE2Q9BYF1 805 aaPredicted RBP12.63□□□□□ -0.39
COL6A3-203ENST00000353578 ZNF639Q9UID6 485 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 DGKBQ9Y6T7 804 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 ARID1BQ8NFD5 2236 aaPredicted RBP12.63□□□□□ -0.39
COL6A3-203ENST00000353578 FAM170AA1A519 330 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 KMOO15229 486 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 OTCP00480 354 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 MCOLN2Q8IZK6 566 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 CBR4Q8N4T8 237 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 ATG4AQ8WYN0 398 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 HPF1Q9NWY4 346 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 C9P02748 559 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 HPGDP15428 266 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 CD40LGP29965 261 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 ASMTP46597 345 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 AFF1P51825 1210 aaKnown RBP12.63□□□□□ -0.39
COL6A3-203ENST00000353578 TTLL4Q14679 1199 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 CHRNA2Q15822 529 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 UBE2SQ16763 222 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 ZNF404Q494X3 552 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 SBK1Q52WX2 424 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 C16orf46Q6P387 395 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 ZNF613Q6PF04 617 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 ZNF615Q8N8J6 731 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 NKX2-3Q8TAU0 364 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 ISOC1Q96CN7 298 aa12.63□□□□□ -0.39
COL6A3-203ENST00000353578 GTF2E2P29084 291 aaKnown RBP12.62□□□□□ -0.39
COL6A3-203ENST00000353578 ARF5P84085 180 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 ECHDC2Q86YB7 292 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 ABRAQ8N0Z2 381 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 EXOC2Q96KP1 924 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 HNRNPABQ99729 332 aaKnown RBP12.62□□□□□ -0.39
COL6A3-203ENST00000353578 GFOD1Q9NXC2 390 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 ZNF432O94892 652 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 SLC6A2P23975 617 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 CENPAP49450 140 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 NADK2Q4G0N4 442 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 IL17REQ8NFR9 667 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 IFT27Q9BW83 186 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 SAV1Q9H4B6 383 aaPredicted RBP12.62□□□□□ -0.39
COL6A3-203ENST00000353578 POMKQ9H5K3 350 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 NPAP1Q9NZP6 1156 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 SLC28A1O00337 649 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 ATMINO43313 823 aaPredicted RBP12.62□□□□□ -0.39
COL6A3-203ENST00000353578 USP12O75317 370 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 GRIA4P48058 902 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 UBAP2LQ14157 1087 aaKnown RBP12.62□□□□□ -0.39
COL6A3-203ENST00000353578 OR2T12Q8NG77 320 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 ZNF431Q8TF32 576 aaPredicted RBP12.62□□□□□ -0.39
COL6A3-203ENST00000353578 OR6C70A6NIJ9 312 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 TTLL13PA6NNM8 815 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 FAM189A1O60320 539 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 PVALBP20472 110 aaPredicted RBP12.62□□□□□ -0.39
COL6A3-203ENST00000353578 LARGE2Q8N3Y3 721 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 GREM2Q9H772 168 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 METTL8Q9H825 291 aaKnown RBP12.62□□□□□ -0.39
COL6A3-203ENST00000353578 ROBO3Q96MS0 1386 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 SEC22BO75396 215 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 UGT2B17O75795 530 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 BMP7P18075 431 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 ADORA2BP29275 332 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 GLRBP48167 497 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 SLC7A2P52569 658 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 ZNF267Q14586 743 aaPredicted RBP12.62□□□□□ -0.39
COL6A3-203ENST00000353578 SPATA6LQ8N4H0 392 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 SSX3Q99909 188 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 XPNPEP3Q9NQH7 507 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 CLEC4AQ9UMR7 237 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 DLG5Q8TDM6 1919 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 ABCA6Q8N139 1617 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 ALOX15BO15296 676 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 MRPS14O60783 128 aaKnown RBP12.62□□□□□ -0.39
COL6A3-203ENST00000353578 SLITRK5O94991 958 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 CSN2P05814 226 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 PTPN1P18031 435 aaKnown RBP12.62□□□□□ -0.39
COL6A3-203ENST00000353578 IMPDH1P20839 514 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 CYP24A1Q07973 514 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 TPRG1LQ5T0D9 272 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 CLYBLQ8N0X4 340 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 SETD6Q8TBK2 473 aa12.62□□□□□ -0.39
COL6A3-203ENST00000353578 JPH3Q8WXH2 748 aaPredicted RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms