RNA–Protein interactions for RNA: ENST00000353317.9

TRIM55-204, Transcript of tripartite motif containing 55, humanhuman

TSL 1 (best) BASIC

Gene TRIM55, Length 2,624 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55-204ENST00000353317 ZNF423Q2M1K9 1284 aa8.65□□□□□ -1.02
TRIM55-204ENST00000353317 PABPC1LQ4VXU2 614 aaKnown RBP8.65□□□□□ -1.02
TRIM55-204ENST00000353317 PIGGQ5H8A4 983 aa8.65□□□□□ -1.02
TRIM55-204ENST00000353317 TXNDC8Q6A555 127 aa8.65□□□□□ -1.02
TRIM55-204ENST00000353317 TFAP2DQ7Z6R9 452 aa8.65□□□□□ -1.02
TRIM55-204ENST00000353317 LILRA2Q8N149 483 aa8.65□□□□□ -1.02
TRIM55-204ENST00000353317 CFAP52Q8N1V2 620 aa8.65□□□□□ -1.02
TRIM55-204ENST00000353317 TMEM151AQ8N4L1 468 aa8.65□□□□□ -1.02
TRIM55-204ENST00000353317 KYQ8NBH2 561 aa8.65□□□□□ -1.02
TRIM55-204ENST00000353317 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.65□□□□□ -1.02
TRIM55-204ENST00000353317 PSMG2Q969U7 264 aa8.65□□□□□ -1.02
TRIM55-204ENST00000353317 CNDP1Q96KN2 507 aa8.65□□□□□ -1.02
TRIM55-204ENST00000353317 ZFRQ96KR1 1074 aaKnown RBP8.65□□□□□ -1.02
TRIM55-204ENST00000353317 FERMT1Q9BQL6 677 aa8.65□□□□□ -1.02
TRIM55-204ENST00000353317 LRRC40Q9H9A6 602 aa8.65□□□□□ -1.02
TRIM55-204ENST00000353317 OXSMQ9NWU1 459 aa8.65□□□□□ -1.02
TRIM55-204ENST00000353317 HCFC1R1Q9NWW0 138 aa8.65□□□□□ -1.02
TRIM55-204ENST00000353317 IGSF9Q9P2J2 1179 aa8.65□□□□□ -1.02
TRIM55-204ENST00000353317 RIMS3Q9UJD0 308 aa8.65□□□□□ -1.02
TRIM55-204ENST00000353317 PRPF19Q9UMS4 504 aaKnown RBP8.65□□□□□ -1.02
TRIM55-204ENST00000353317 LZTS1Q9Y250 596 aa8.65□□□□□ -1.02
TRIM55-204ENST00000353317 CLPTM1O96005 669 aa8.65□□□□□ -1.03
TRIM55-204ENST00000353317 CA3P07451 260 aa8.65□□□□□ -1.03
TRIM55-204ENST00000353317 CD68P34810 354 aaPredicted RBP8.65□□□□□ -1.03
TRIM55-204ENST00000353317 DPP6P42658 865 aa8.65□□□□□ -1.03
TRIM55-204ENST00000353317 ATXN3P54252 364 aaPredicted RBP8.65□□□□□ -1.03
TRIM55-204ENST00000353317 PKNOX1P55347 436 aa8.65□□□□□ -1.03
TRIM55-204ENST00000353317 GALNT2Q10471 571 aa8.65□□□□□ -1.03
TRIM55-204ENST00000353317 PDK1Q15118 436 aa8.65□□□□□ -1.03
TRIM55-204ENST00000353317 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.65□□□□□ -1.03
TRIM55-204ENST00000353317 TMEM198Q66K66 360 aa8.65□□□□□ -1.03
TRIM55-204ENST00000353317 PAOXQ6QHF9 649 aa8.65□□□□□ -1.03
TRIM55-204ENST00000353317 RBM44Q6ZP01 1051 aaKnown RBP8.65□□□□□ -1.03
TRIM55-204ENST00000353317 TICAM1Q8IUC6 712 aa8.65□□□□□ -1.03
TRIM55-204ENST00000353317 CNTD1Q8N815 330 aa8.65□□□□□ -1.03
TRIM55-204ENST00000353317 MRPL43Q8N983 215 aaKnown RBP8.65□□□□□ -1.03
TRIM55-204ENST00000353317 USP13Q92995 863 aaPredicted RBP8.65□□□□□ -1.03
TRIM55-204ENST00000353317 MPP4Q96JB8 637 aa8.65□□□□□ -1.03
TRIM55-204ENST00000353317 C1orf74Q96LT6 269 aa8.65□□□□□ -1.03
TRIM55-204ENST00000353317 TRIM62Q9BVG3 475 aa8.65□□□□□ -1.03
TRIM55-204ENST00000353317 NUF2Q9BZD4 464 aa8.65□□□□□ -1.03
TRIM55-204ENST00000353317 ILKAPQ9H0C8 392 aaPredicted RBP8.65□□□□□ -1.03
TRIM55-204ENST00000353317 COPS7BQ9H9Q2 264 aaPredicted RBP8.65□□□□□ -1.03
TRIM55-204ENST00000353317 HSFX1Q9UBD0 423 aa8.65□□□□□ -1.03
TRIM55-204ENST00000353317 YBX2Q9Y2T7 364 aaKnown RBP8.65□□□□□ -1.03
TRIM55-204ENST00000353317 AP4B1Q9Y6B7 739 aa8.65□□□□□ -1.03
TRIM55-204ENST00000353317 MYLKQ15746 1914 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 MYOCOSA0A1B0GUC4 107 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 GOLGA8TH3BQL2 631 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 STX16-NPEPL1H3BU86 382 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 PER2O15055 1255 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 HDAC3O15379 428 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 CFLARO15519 480 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 ATP9BO43861 1147 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 GREM1O60565 184 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 MPOP05164 745 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 JUNP05412 331 aaKnown RBP8.64□□□□□ -1.03
TRIM55-204ENST00000353317 SBK3P0C264 359 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 TFEBP19484 476 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 PTPN3P26045 913 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 ATP5C1P36542 298 aaKnown RBP8.64□□□□□ -1.03
TRIM55-204ENST00000353317 RPL5P46777 297 aaKnown RBP8.64□□□□□ -1.03
TRIM55-204ENST00000353317 RPL14P50914 215 aaKnown RBP8.64□□□□□ -1.03
TRIM55-204ENST00000353317 INHBCP55103 352 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 CYP4F8P98187 520 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 MYBPC1Q00872 1141 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 CEACAM7Q14002 265 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 NADK2Q4G0N4 442 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 ARL13AQ5H913 290 aaPredicted RBP8.64□□□□□ -1.03
TRIM55-204ENST00000353317 RARS2Q5T160 578 aaKnown RBP8.64□□□□□ -1.03
TRIM55-204ENST00000353317 COL13A1Q5TAT6 717 aaPredicted RBP8.64□□□□□ -1.03
TRIM55-204ENST00000353317 SEL1L3Q68CR1 1132 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 C16orf89Q6UX73 402 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 TMC8Q8IU68 726 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.64□□□□□ -1.03
TRIM55-204ENST00000353317 DNAAF3Q8N9W5 541 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 RP9Q8TA86 221 aaKnown RBP8.64□□□□□ -1.03
TRIM55-204ENST00000353317 RCN3Q96D15 328 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 DTNBP1Q96EV8 351 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 TRMT2BQ96GJ1 504 aaKnown RBP8.64□□□□□ -1.03
TRIM55-204ENST00000353317 HIC2Q96JB3 615 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 CNBD2Q96M20 576 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 LRGUKQ96M69 825 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 SERPINI1Q99574 410 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 MCMBPQ9BTE3 642 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 CHRAC1Q9NRG0 131 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 COMMD8Q9NX08 183 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 SMPD4Q9NXE4 827 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 NDUFA13Q9P0J0 144 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 KLHL8Q9P2G9 620 aaPredicted RBP8.64□□□□□ -1.03
TRIM55-204ENST00000353317 ZDHHC2Q9UIJ5 367 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 APPL1Q9UKG1 709 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 RAB26Q9ULW5 256 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 ACTL7AQ9Y615 435 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 IGLV3-10A0A075B6K4 115 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 GRID2O43424 1007 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 MAFKO60675 156 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 STC2O76061 302 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 AP2A1O95782 977 aa8.64□□□□□ -1.03
TRIM55-204ENST00000353317 ASLP04424 464 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms