RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 SLC35F5Q8WV83 523 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 HEXDCQ8WVB3 486 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 TRIB2Q92519 343 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 HPDLQ96IR7 371 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 SLC30A3Q99726 388 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 ALOXE3Q9BYJ1 711 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 RHOBTB2Q9BYZ6 727 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 NDEL1Q9GZM8 345 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 NACA2Q9H009 215 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 MRPL46Q9H2W6 279 aaKnown RBP6.82□□□□□ -1.32
VPS39-202ENST00000348544 HMG20AQ9NP66 347 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 LTB4R2Q9NPC1 389 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 KLHL8Q9P2G9 620 aaPredicted RBP6.82□□□□□ -1.32
VPS39-202ENST00000348544 MTRRQ9UBK8 725 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 GIMAP2Q9UG22 337 aa6.82□□□□□ -1.32
VPS39-202ENST00000348544 IGKV6D-21A0A0A0MT36 114 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 PSMD11O00231 422 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 VWA5AO00534 786 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 AURKAO14965 403 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 INPP4BO15327 924 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 ZBTB24O43167 697 aaPredicted RBP6.81□□□□□ -1.32
VPS39-202ENST00000348544 GPC4O75487 556 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 ASNSP08243 561 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 TCF3P15923 654 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 CYP2B6P20813 491 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 BDNFP23560 247 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 GSTM2P28161 218 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 SOX11P35716 441 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 BMPR1AP36894 532 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 ARL4AP40617 200 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 HADHAP40939 763 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 APLP1P51693 650 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 PLK1P53350 603 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 DNAJB13P59910 316 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 RAB10P61026 200 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 PITX1P78337 314 aaPredicted RBP6.81□□□□□ -1.32
VPS39-202ENST00000348544 TRIM32Q13049 653 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 CTBP1Q13363 440 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 MAPRE1Q15691 268 aaKnown RBP6.81□□□□□ -1.32
VPS39-202ENST00000348544 PSMD5Q16401 504 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 GEN1Q17RS7 908 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 VPS26BQ4G0F5 336 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 ATF7IP2Q5U623 682 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 PLEKHG7Q6ZR37 379 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 CYP2U1Q7Z449 544 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 TFAP2DQ7Z6R9 452 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 ACOT1Q86TX2 421 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 TTC30BQ8N4P2 665 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 GOLM1Q8NBJ4 401 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 MINDY2Q8NBR6 621 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 ZNF280CQ8ND82 737 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 BTN2A3PQ96KV6 586 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 TRIM15Q9C019 465 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 ENPP5Q9UJA9 477 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 FZD10Q9ULW2 581 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 SCAF8Q9UPN6 1271 aaKnown RBP6.81□□□□□ -1.32
VPS39-202ENST00000348544 IFT52Q9Y366 437 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 PMF1-BGLAPU3KQ54 211 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 A0A0J9YYE9 177 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 FAM95CA0A1B0GW59 222 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 ANKRD34BA5PLL1 514 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 A8MT66 165 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 H0YAE9 185 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 UGT2B11O75310 529 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 GPIP06744 558 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 TSPAN8P19075 237 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 ATP5F1P24539 256 aaPredicted RBP6.81□□□□□ -1.32
VPS39-202ENST00000348544 NR4A2P43354 598 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 TAS2R39P59534 338 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 OCA2Q04671 838 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 DMPKQ09013 629 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 BNIP2Q12982 314 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 POLD3Q15054 466 aaPredicted RBP6.81□□□□□ -1.32
VPS39-202ENST00000348544 CARTPTQ16568 116 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 PARP14Q460N5 1801 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 OTUD3Q5T2D3 398 aaPredicted RBP6.81□□□□□ -1.32
VPS39-202ENST00000348544 OTUD1Q5VV17 481 aaPredicted RBP6.81□□□□□ -1.32
VPS39-202ENST00000348544 LINC00523Q86TU6 105 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 SLC22A16Q86VW1 577 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 ATP6V0D2Q8N8Y2 350 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 PAPD5Q8NDF8 572 aaKnown RBP6.81□□□□□ -1.32
VPS39-202ENST00000348544 GABPB2Q8TAK5 448 aaPredicted RBP6.81□□□□□ -1.32
VPS39-202ENST00000348544 RNF139Q8WU17 664 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 LPAR1Q92633 364 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 NRCAMQ92823 1304 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 OTUD5Q96G74 571 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 VMP1Q96GC9 406 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 BTBD2Q9BX70 525 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 NT5C1AQ9BXI3 368 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 DGCR6LQ9BY27 220 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 WDR12Q9GZL7 423 aaKnown RBP6.81□□□□□ -1.32
VPS39-202ENST00000348544 HOXD1Q9GZZ0 328 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 MINDY3Q9H8M7 445 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 RPF1Q9H9Y2 349 aaKnown RBP6.81□□□□□ -1.32
VPS39-202ENST00000348544 NTN4Q9HB63 628 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 C8orf4Q9NR00 106 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 IGSF5Q9NSI5 407 aa6.81□□□□□ -1.32
VPS39-202ENST00000348544 INTS10Q9NVR2 710 aaKnown RBP6.81□□□□□ -1.32
VPS39-202ENST00000348544 THG1LQ9NWX6 298 aaKnown RBP6.81□□□□□ -1.32
VPS39-202ENST00000348544 UBP1Q9NZI7 540 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms