RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 DSEQ9UL01 958 aa22.45■■□□□ 1.18
TRIM28-202ENST00000341753 ZSWIM8A7E2V4 1837 aa22.45■■□□□ 1.18
TRIM28-202ENST00000341753 SUPT7LO94864 414 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 NPR3P17342 541 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 C21orf59P57076 290 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 TNK2Q07912 1038 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 RWDD4Q6NW29 188 aaKnown RBP22.44■■□□□ 1.18
TRIM28-202ENST00000341753 PAQR9Q6ZVX9 377 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 KCTD8Q6ZWB6 473 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 ANKRD49Q8WVL7 239 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 PLEKHA8Q96JA3 519 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 OR12D3Q9UGF7 316 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 FBXO5Q9UKT4 447 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 PPP6CO00743 305 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 LRIG2O94898 1065 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 USP17L7P0C7H9 530 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 DNAJB13P59910 316 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 NANOGP8Q6NSW7 305 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 C16orf87Q6PH81 154 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 CLEC20AQ6ZU45 233 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 LDB1Q86U70 411 aaPredicted RBP22.44■■□□□ 1.18
TRIM28-202ENST00000341753 AFAP1L2Q8N4X5 818 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 TNIP2Q8NFZ5 429 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 ZC3H15Q8WU90 426 aaKnown RBP22.44■■□□□ 1.18
TRIM28-202ENST00000341753 COX4I2Q96KJ9 171 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 SLC2A13Q96QE2 648 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 PTPN18Q99952 460 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 EML4Q9HC35 981 aaKnown RBP22.44■■□□□ 1.18
TRIM28-202ENST00000341753 DOCK3Q8IZD9 2030 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 A0A0J9YYE9 177 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 NCAM2O15394 837 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 STX1BP61266 288 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 SLC36A3Q495N2 470 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 MFSD2AQ8NA29 543 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 TANKQ92844 425 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 ERLEC1Q96DZ1 483 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 AGPAT4Q9NRZ5 378 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 FBXW11Q9UKB1 542 aa22.44■■□□□ 1.18
TRIM28-202ENST00000341753 TRIM64CA6NLI5 447 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 B4GAT1O43505 415 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 OCM2P0CE71 109 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 OCMP0CE72 109 aaPredicted RBP22.43■■□□□ 1.18
TRIM28-202ENST00000341753 NCK1P16333 377 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 ZNF182P17025 639 aaPredicted RBP22.43■■□□□ 1.18
TRIM28-202ENST00000341753 KCNC1P48547 511 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 DCAF4L1Q3SXM0 396 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 PPHLN1Q8NEY8 458 aaKnown RBP22.43■■□□□ 1.18
TRIM28-202ENST00000341753 SH3RF2Q8TEC5 729 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 TKTL2Q9H0I9 626 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 ALG9Q9H6U8 611 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 TUBA8Q9NY65 449 aaPredicted RBP22.43■■□□□ 1.18
TRIM28-202ENST00000341753 PAIP2BQ9ULR5 123 aaKnown RBP22.43■■□□□ 1.18
TRIM28-202ENST00000341753 COQ6Q9Y2Z9 468 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 FADS3Q9Y5Q0 445 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 K7EPI3 171 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 CCL22O00626 93 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 TREHO43280 583 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 FUCA1P04066 466 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 CAPN3P20807 821 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 FASP25445 335 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 APLP1P51693 650 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 BEX3Q00994 111 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 TRAF2Q12933 501 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 DENND5AQ6IQ26 1287 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 CNTN4Q8IWV2 1026 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 SLC15A3Q8IY34 581 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 MAGEE2Q8TD90 523 aaPredicted RBP22.43■■□□□ 1.18
TRIM28-202ENST00000341753 BORCS5Q969J3 196 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 HDAC10Q969S8 669 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 GSTO2Q9H4Y5 243 aa22.43■■□□□ 1.18
TRIM28-202ENST00000341753 TRIP12Q14669 1992 aaPredicted RBP22.42■■□□□ 1.18
TRIM28-202ENST00000341753 A0A087X1B8 175 aa22.42■■□□□ 1.18
TRIM28-202ENST00000341753 KANSL1LA0AUZ9 987 aa22.42■■□□□ 1.18
TRIM28-202ENST00000341753 MTSS1O43312 755 aa22.42■■□□□ 1.18
TRIM28-202ENST00000341753 GPX3P22352 226 aa22.42■■□□□ 1.18
TRIM28-202ENST00000341753 RELAQ04206 551 aa22.42■■□□□ 1.18
TRIM28-202ENST00000341753 PCSK7Q16549 785 aa22.42■■□□□ 1.18
TRIM28-202ENST00000341753 LARP4Q71RC2 724 aaKnown RBP eCLIP22.42■■□□□ 1.188e-10■■■□□ 18.9
TRIM28-202ENST00000341753 LINC00523Q86TU6 105 aa22.42■■□□□ 1.18
TRIM28-202ENST00000341753 FAR2Q96K12 515 aa22.42■■□□□ 1.18
TRIM28-202ENST00000341753 SIK2Q9H0K1 926 aa22.42■■□□□ 1.18
TRIM28-202ENST00000341753 AKTIPQ9H8T0 292 aa22.42■■□□□ 1.18
TRIM28-202ENST00000341753 CPA4Q9UI42 421 aa22.42■■□□□ 1.18
TRIM28-202ENST00000341753 CDH7Q9ULB5 785 aa22.42■■□□□ 1.18
TRIM28-202ENST00000341753 SMIM28A0A1B0GU29 152 aa22.42■■□□□ 1.18
TRIM28-202ENST00000341753 PIRO00625 290 aa22.42■■□□□ 1.18
TRIM28-202ENST00000341753 INPP4BO15327 924 aa22.42■■□□□ 1.18
TRIM28-202ENST00000341753 HUS1O60921 280 aa22.42■■□□□ 1.18
TRIM28-202ENST00000341753 PORP16435 677 aaPredicted RBP22.42■■□□□ 1.18
TRIM28-202ENST00000341753 IL10P22301 178 aa22.42■■□□□ 1.18
TRIM28-202ENST00000341753 PSMA4P25789 261 aaKnown RBP22.42■■□□□ 1.18
TRIM28-202ENST00000341753 GRB14Q14449 540 aa22.42■■□□□ 1.18
TRIM28-202ENST00000341753 PSMD5Q16401 504 aa22.42■■□□□ 1.18
TRIM28-202ENST00000341753 GEN1Q17RS7 908 aa22.42■■□□□ 1.18
TRIM28-202ENST00000341753 NOTUMQ6P988 496 aa22.42■■□□□ 1.18
TRIM28-202ENST00000341753 DCDC5Q6ZRR9 648 aa22.42■■□□□ 1.18
TRIM28-202ENST00000341753 CENPSQ8N2Z9 138 aa22.42■■□□□ 1.18
TRIM28-202ENST00000341753 ARRDC4Q8NCT1 418 aa22.42■■□□□ 1.18
TRIM28-202ENST00000341753 C19orf60Q96EN9 201 aa22.42■■□□□ 1.18
TRIM28-202ENST00000341753 CMTM6Q9NX76 183 aa22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms