RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 RASAL3Q86YV0 1011 aa8.72□□□□□ -1.01
RTN3-202ENST00000339997 SLC34A3Q8N130 599 aa8.72□□□□□ -1.01
RTN3-202ENST00000339997 IPCEF1Q8WWN9 437 aaPredicted RBP8.72□□□□□ -1.01
RTN3-202ENST00000339997 TLCD1Q96CP7 247 aa8.72□□□□□ -1.01
RTN3-202ENST00000339997 C1GALT1C1Q96EU7 318 aa8.72□□□□□ -1.01
RTN3-202ENST00000339997 OR52E6Q96RD3 313 aa8.72□□□□□ -1.01
RTN3-202ENST00000339997 CYP2S1Q96SQ9 504 aa8.72□□□□□ -1.01
RTN3-202ENST00000339997 GAL3ST1Q99999 423 aa8.72□□□□□ -1.01
RTN3-202ENST00000339997 GATA5Q9BWX5 397 aaPredicted RBP8.72□□□□□ -1.01
RTN3-202ENST00000339997 PCDH18Q9HCL0 1135 aa8.72□□□□□ -1.01
RTN3-202ENST00000339997 EXD2Q9NVH0 621 aa8.72□□□□□ -1.01
RTN3-202ENST00000339997 UCKL1Q9NWZ5 548 aa8.72□□□□□ -1.01
RTN3-202ENST00000339997 POLR3HQ9Y535 204 aaPredicted RBP8.72□□□□□ -1.01
RTN3-202ENST00000339997 DNAJC13O75165 2243 aa8.72□□□□□ -1.01
RTN3-202ENST00000339997 MEGF6O75095 1541 aa8.72□□□□□ -1.01
RTN3-202ENST00000339997 TCRBV7S3A2A0A539 114 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 CCDC182A6NF36 153 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 WNT10BO00744 389 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 RGL2O15211 777 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 TBX1O43435 398 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 OR10H3O60404 316 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 FARP2O94887 1054 aaPredicted RBP8.71□□□□□ -1.01
RTN3-202ENST00000339997 PCDH8O95206 1070 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 SEMG2Q02383 582 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 TNK2Q07912 1038 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 GRM3Q14832 879 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 LSM12Q3MHD2 195 aaKnown RBP8.71□□□□□ -1.01
RTN3-202ENST00000339997 ZDHHC24Q6UX98 284 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 PIGWQ7Z7B1 504 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 DEFB132Q7Z7B7 95 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 YAF2Q8IY57 180 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 CEP295NLQ96MC4 621 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 LPIN3Q9BQK8 851 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 CDT1Q9H211 546 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 PORCNQ9H237 461 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 EPB41L4BQ9H329 900 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 ITM2CQ9NQX7 267 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 UXTQ9UBK9 157 aaPredicted RBP8.71□□□□□ -1.01
RTN3-202ENST00000339997 ITGA11Q9UKX5 1188 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 MDM4O15151 490 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 ERAL1O75616 437 aaKnown RBP8.71□□□□□ -1.01
RTN3-202ENST00000339997 SLC25A27O95847 323 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 MYL4P12829 197 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 PTPN1P18031 435 aaKnown RBP8.71□□□□□ -1.01
RTN3-202ENST00000339997 AP1S2P56377 157 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 RHAGQ02094 409 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 IRAK1BP1Q5VVH5 260 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 RPS27LQ71UM5 84 aaKnown RBP8.71□□□□□ -1.01
RTN3-202ENST00000339997 CCDC80Q76M96 950 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 DENND6AQ8IWF6 608 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 GHDCQ8N2G8 530 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 ZNF398Q8TD17 642 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 BSNDQ8WZ55 320 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 TRIM63Q969Q1 353 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 TRPM5Q9NZQ8 1165 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 PTGFRNQ9P2B2 879 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 TRHDEQ9UKU6 1024 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 PCDHB8Q9UN66 801 aa8.71□□□□□ -1.01
RTN3-202ENST00000339997 XIRP1Q702N8 1843 aaKnown RBP8.71□□□□□ -1.02
RTN3-202ENST00000339997 CAMTA1Q9Y6Y1 1673 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 RGS14O43566 566 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 ERN1O75460 977 aaKnown RBP8.71□□□□□ -1.02
RTN3-202ENST00000339997 SNX4O95219 450 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 CFHP08603 1231 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 MAPTP10636 758 aaKnown RBP8.71□□□□□ -1.02
RTN3-202ENST00000339997 MTHFD1P11586 935 aaKnown RBP8.71□□□□□ -1.02
RTN3-202ENST00000339997 MMP8P22894 467 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 PFKPQ01813 784 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 KLHL12Q53G59 568 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 MFSD5Q6N075 450 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 TRAPPC5Q8IUR0 188 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 LRRC49Q8IUZ0 686 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 FAM45AQ8TCE6 357 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 HELQQ8TDG4 1101 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 PHF10Q8WUB8 498 aaKnown RBP8.71□□□□□ -1.02
RTN3-202ENST00000339997 C18orf25Q96B23 403 aaPredicted RBP8.71□□□□□ -1.02
RTN3-202ENST00000339997 CTPS2Q9NRF8 586 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 LEF1Q9UJU2 399 aaPredicted RBP8.71□□□□□ -1.02
RTN3-202ENST00000339997 SORCS3Q9UPU3 1222 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 PCDHB7Q9Y5E2 793 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 SPATA31D1Q6ZQQ2 1576 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 ADM5C9JUS6 153 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 TMEM63AO94886 807 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 NUDT14O95848 222 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 PPP2R1BP30154 601 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 NOS2P35228 1153 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 PTGIRP43119 386 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 ABRQ12979 859 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 OLIG2Q13516 323 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 SQLEQ14534 574 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 SNX17Q15036 470 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 SYT16Q17RD7 645 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 SLC27A1Q6PCB7 646 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 ZPBP2Q6X784 338 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 NAPRTQ6XQN6 538 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 ZNF662Q6ZS27 426 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 PROSER1Q86XN7 944 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 TRIM48Q8IWZ4 208 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 PLD5Q8N7P1 536 aa8.71□□□□□ -1.02
RTN3-202ENST00000339997 MCOLN3Q8TDD5 553 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms