RNA–Protein interactions for RNA: ENST00000337526.10

RTN4-202, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,790 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-202ENST00000337526 GDF10P55107 478 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 SH3BP5LQ7L8J4 393 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 DAW1Q8N136 415 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 ATL1Q8WXF7 558 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 LENG1Q96BZ8 264 aaPredicted RBP13.78□□□□□ -0.2
RTN4-202ENST00000337526 ZHX1-C8orf76Q96EF9 292 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 OSBPL6Q9BZF3 934 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 DNAJC28Q9NX36 388 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 VPS51Q9UID3 782 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 SLC27A5Q9Y2P5 690 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 ANKDD1BA6NHY2 528 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 HDCP19113 662 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 SP100P23497 879 aaPredicted RBP13.78□□□□□ -0.2
RTN4-202ENST00000337526 MFSD4BQ5TF39 518 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 PGAM4Q8N0Y7 254 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 CD101Q93033 1021 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 AGO1Q9UL18 857 aaKnown RBP13.78□□□□□ -0.2
RTN4-202ENST00000337526 BBIP1A8MTZ0 92 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 M0R2N6 131 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 DBTP11182 482 aaKnown RBP13.78□□□□□ -0.2
RTN4-202ENST00000337526 SNRPD1P62314 119 aaKnown RBP13.78□□□□□ -0.2
RTN4-202ENST00000337526 RFX4Q33E94 735 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 FSTL4Q6MZW2 842 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 TRMT10BQ6PF06 316 aaKnown RBP13.78□□□□□ -0.2
RTN4-202ENST00000337526 OR2T12Q8NG77 320 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 ZDHHC6Q9H6R6 413 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 ABCB10Q9NRK6 738 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 MAPRE3Q9UPY8 281 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 IPPQ9Y573 584 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 SLC28A1O00337 649 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 RFXANKO14593 260 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 PSMA3P25788 255 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 KLRC2P26717 231 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 IFNGR2P38484 337 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 IL12RB1P42701 662 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 HECTD2Q5U5R9 776 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 LBX2Q6XYB7 198 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 ZNF567Q8N184 647 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 ARMC7Q9H6L4 198 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 KLHL1Q9NR64 748 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 EHD3Q9NZN3 535 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 SPATA2Q9UM82 520 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 GIT1Q9Y2X7 761 aa13.78□□□□□ -0.2
RTN4-202ENST00000337526 MAFBQ9Y5Q3 323 aaPredicted RBP13.78□□□□□ -0.2
RTN4-202ENST00000337526 DPYSQ14117 519 aa13.77□□□□□ -0.2
RTN4-202ENST00000337526 CNSTQ6PJW8 725 aa13.77□□□□□ -0.2
RTN4-202ENST00000337526 EIF3MQ7L2H7 374 aaKnown RBP13.77□□□□□ -0.2
RTN4-202ENST00000337526 DET1Q7L5Y6 550 aa13.77□□□□□ -0.2
RTN4-202ENST00000337526 CNTD1Q8N815 330 aa13.77□□□□□ -0.2
RTN4-202ENST00000337526 PCDH19Q8TAB3 1148 aa13.77□□□□□ -0.2
RTN4-202ENST00000337526 VPS35Q96QK1 796 aa13.77□□□□□ -0.2
RTN4-202ENST00000337526 GORASP1Q9BQQ3 440 aa13.77□□□□□ -0.2
RTN4-202ENST00000337526 ATP13A3Q9H7F0 1226 aa13.77□□□□□ -0.2
RTN4-202ENST00000337526 AGO3Q9H9G7 860 aaKnown RBP13.77□□□□□ -0.2
RTN4-202ENST00000337526 PCDH12Q9NPG4 1184 aa13.77□□□□□ -0.2
RTN4-202ENST00000337526 SPG21Q9NZD8 308 aa13.77□□□□□ -0.2
RTN4-202ENST00000337526 ATP6V1HQ9UI12 483 aa13.77□□□□□ -0.2
RTN4-202ENST00000337526 IKZF3Q9UKT9 509 aa13.77□□□□□ -0.2
RTN4-202ENST00000337526 KCNU1A8MYU2 1149 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 MSI1O43347 362 aaKnown RBP13.77□□□□□ -0.21
RTN4-202ENST00000337526 SGTAO43765 313 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 TMEM63AO94886 807 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 PAX3P23760 479 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 CD52P31358 61 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 PRKAG1P54619 331 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 PFKPQ01813 784 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 TRIM71Q2Q1W2 868 aaKnown RBP13.77□□□□□ -0.21
RTN4-202ENST00000337526 TREML2Q5T2D2 321 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 CPSF7Q8N684 471 aaKnown RBP13.77□□□□□ -0.21
RTN4-202ENST00000337526 C19orf60Q96EN9 201 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 PPM1MQ96MI6 270 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 GSTK1Q9Y2Q3 226 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 PCDHA2Q9Y5H9 948 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 SF3B1O75533 1304 aaKnown RBP eCLIP13.77□□□□□ -0.212e-6■■■■■ 75.3
RTN4-202ENST00000337526 RPN2P04844 631 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 CNPP09543 421 aaKnown RBP13.77□□□□□ -0.21
RTN4-202ENST00000337526 MC4RP32245 332 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 NOMO2Q5JPE7 1267 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 CDC73Q6P1J9 531 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 NEK10Q6ZWH5 1172 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 HIPK1Q86Z02 1210 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 SPPL2CQ8IUH8 684 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 PYROXD2Q8N2H3 581 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 ZNF781Q8N8C0 355 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 POC5Q8NA72 575 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 GIPC3Q8TF64 312 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 MAGEL2Q9UJ55 1249 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 U3KQV3 271 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 CNTNAP1P78357 1384 aa13.77□□□□□ -0.21
RTN4-202ENST00000337526 TK2O00142 265 aa13.76□□□□□ -0.21
RTN4-202ENST00000337526 TCEA3O75764 348 aa13.76□□□□□ -0.21
RTN4-202ENST00000337526 FBXL19Q6PCT2 694 aa13.76□□□□□ -0.21
RTN4-202ENST00000337526 MACC1Q6ZN28 852 aa13.76□□□□□ -0.21
RTN4-202ENST00000337526 MOB2Q70IA6 237 aa13.76□□□□□ -0.21
RTN4-202ENST00000337526 ZC3H7AQ8IWR0 971 aaKnown RBP13.76□□□□□ -0.21
RTN4-202ENST00000337526 PPTC7Q8NI37 304 aa13.76□□□□□ -0.21
RTN4-202ENST00000337526 GRIN3AQ8TCU5 1115 aa13.76□□□□□ -0.21
RTN4-202ENST00000337526 CLEC4DQ8WXI8 215 aa13.76□□□□□ -0.21
RTN4-202ENST00000337526 PIK3R5Q8WYR1 880 aa13.76□□□□□ -0.21
RTN4-202ENST00000337526 NLNQ9BYT8 704 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms