RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 DNAAF5Q86Y56 855 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 FATE1Q969F0 183 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 SLC4A9Q96Q91 983 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 TKTL2Q9H0I9 626 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 AGO4Q9HCK5 861 aaKnown RBP13.9□□□□□ -0.18
CSPG4-201ENST00000308508 SUCOQ9UBS9 1254 aaKnown RBP13.9□□□□□ -0.18
CSPG4-201ENST00000308508 PCDHB5Q9Y5E4 795 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 GTPBP1O00178 669 aaKnown RBP13.9□□□□□ -0.18
CSPG4-201ENST00000308508 AKAP8O43823 692 aaKnown RBP13.9□□□□□ -0.18
CSPG4-201ENST00000308508 PITPNAQ00169 270 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 FAM182BQ5T319 152 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 C6orf52Q5T4I8 152 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 C3orf67Q6ZVT6 689 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 NXNL1Q96CM4 212 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 GLT1D1Q96MS3 346 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 MCCC1Q96RQ3 725 aaPredicted RBP13.9□□□□□ -0.18
CSPG4-201ENST00000308508 LRRC19Q9H756 370 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 ABCB9Q9NP78 766 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 THG1LQ9NWX6 298 aaKnown RBP13.9□□□□□ -0.18
CSPG4-201ENST00000308508 KANSL3Q9P2N6 904 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 IFNA7P01567 189 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 CDH5P33151 784 aaPredicted RBP13.9□□□□□ -0.18
CSPG4-201ENST00000308508 POTEHQ6S545 545 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 P2RY8Q86VZ1 359 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 GAL3ST3Q96A11 431 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 TAMM41Q96BW9 452 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 SNCAIPQ9Y6H5 919 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 PREX2Q70Z35 1606 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 SIGLEC16A6NMB1 481 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 AZIN1O14977 448 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 ITGA2BP08514 1039 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 CYP2C18P33260 490 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 EIF5AP63241 154 aaKnown RBP13.9□□□□□ -0.18
CSPG4-201ENST00000308508 RFTN2Q52LD8 501 aaPredicted RBP13.9□□□□□ -0.18
CSPG4-201ENST00000308508 XKR6Q5GH73 641 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 C10orf107Q8IVU9 208 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 GJD3Q8N144 294 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 DNAJA4Q8WW22 397 aaPredicted RBP13.9□□□□□ -0.18
CSPG4-201ENST00000308508 RAD51AP1Q96B01 352 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 SPACA7Q96KW9 195 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 TMEM106CQ9BVX2 250 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 ZNF780BQ9Y6R6 833 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 HECW2Q9P2P5 1572 aa13.9□□□□□ -0.18
CSPG4-201ENST00000308508 DNAJA2O60884 412 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 RB1P06400 928 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 LINC00032P0C843 101 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 WDR59Q6PJI9 974 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 ZNF557Q8N988 423 aaPredicted RBP13.89□□□□□ -0.19
CSPG4-201ENST00000308508 C12orf66Q96MD2 445 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.89□□□□□ -0.19
CSPG4-201ENST00000308508 GMIPQ9P107 970 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 PLOD2O00469 737 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 MID1O15344 667 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 NRP2O60462 931 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 GLRA2P23416 452 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 OCLNQ16625 522 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 GPER1Q99527 375 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 RNF181Q9P0P0 153 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 IQGAP3Q86VI3 1631 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 USP12O75317 370 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 CXorf57Q6NSI4 855 aaKnown RBP13.89□□□□□ -0.19
CSPG4-201ENST00000308508 SLC4A11Q8NBS3 891 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 TTLL2Q9BWV7 592 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 MARK1Q9P0L2 795 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 PACSIN3Q9UKS6 424 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 MAN2B2Q9Y2E5 1009 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 TRIM17Q9Y577 477 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 ITSN1Q15811 1721 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 ABHD14A-ACY1A0A1B0GW23 586 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 CETPP11597 493 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 CYP4F8P98187 520 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 LRRC38Q5VT99 294 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 LPCAT4Q643R3 524 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 ADGRG2Q8IZP9 1017 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 TRMOQ9BU70 441 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 CLEC4AQ9UMR7 237 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 ATP6V0D1P61421 351 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 MPP2Q14168 576 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 ZNF234Q14588 700 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 CA9Q16790 459 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 OR2T12Q8NG77 320 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 RFKQ969G6 155 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 TP53INP1Q96A56 240 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 PPP1R16AQ96I34 528 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 NPAS2Q99743 824 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 TAS2R7Q9NYW3 318 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 FBXO10Q9UK96 956 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 TM7SF2O76062 418 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 RNASE12Q5GAN4 147 aaKnown RBP13.89□□□□□ -0.19
CSPG4-201ENST00000308508 ZNF662Q6ZS27 426 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 LGI2Q8N0V4 545 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 OR2L5Q8NG80 312 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 CCNHP51946 323 aaPredicted RBP13.89□□□□□ -0.19
CSPG4-201ENST00000308508 EFCAB3Q8N7B9 438 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 MGME1Q9BQP7 344 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 ACSS3Q9H6R3 686 aa13.89□□□□□ -0.19
CSPG4-201ENST00000308508 H3BNH8 94 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 AXIN1O15169 862 aa13.88□□□□□ -0.19
CSPG4-201ENST00000308508 TOP3BO95985 862 aaKnown RBP13.88□□□□□ -0.19
CSPG4-201ENST00000308508 IFNA16P05015 189 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms