RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 KLHDC8BQ8IXV7 354 aa12.44□□□□□ -0.42
NUP88-201ENST00000225696 PPHLN1Q8NEY8 458 aaKnown RBP12.44□□□□□ -0.42
NUP88-201ENST00000225696 MIPOL1Q8TD10 442 aa12.44□□□□□ -0.42
NUP88-201ENST00000225696 GIPC3Q8TF64 312 aa12.44□□□□□ -0.42
NUP88-201ENST00000225696 EXT2Q93063 718 aa12.44□□□□□ -0.42
NUP88-201ENST00000225696 MRGPRX2Q96LB1 330 aa12.44□□□□□ -0.42
NUP88-201ENST00000225696 UBXN10Q96LJ8 280 aa12.44□□□□□ -0.42
NUP88-201ENST00000225696 ZNF560Q96MR9 790 aa12.44□□□□□ -0.42
NUP88-201ENST00000225696 PLGRKTQ9HBL7 147 aa12.44□□□□□ -0.42
NUP88-201ENST00000225696 GPRC5DQ9NZD1 345 aa12.44□□□□□ -0.42
NUP88-201ENST00000225696 ZNHIT2Q9UHR6 403 aa12.44□□□□□ -0.42
NUP88-201ENST00000225696 USP22Q9UPT9 525 aa12.44□□□□□ -0.42
NUP88-201ENST00000225696 DNAJC15Q9Y5T4 150 aa12.44□□□□□ -0.42
NUP88-201ENST00000225696 CSADQ9Y600 493 aa12.44□□□□□ -0.42
NUP88-201ENST00000225696 A0A087WXM4 84 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 OR51F1A6NGY5 319 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 EI24O14681 340 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 SUPT3HO75486 399 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 NCK1P16333 377 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 PGFP49763 221 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 CCR3P51677 355 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 RAB39AQ14964 217 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 PSMD5Q16401 504 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 SV2CQ496J9 727 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 KCTD21Q4G0X4 260 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 UNC50Q53HI1 259 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 INTS6LQ5JSJ4 861 aaKnown RBP12.43□□□□□ -0.42
NUP88-201ENST00000225696 AARS2Q5JTZ9 985 aaKnown RBP12.43□□□□□ -0.42
NUP88-201ENST00000225696 ARTNQ5T4W7 220 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 MFSD2AQ8NA29 543 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 PTERQ96BW5 349 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 C19orf60Q96EN9 201 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 MAML3Q96JK9 1138 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 NSUN5Q96P11 429 aaKnown RBP12.43□□□□□ -0.42
NUP88-201ENST00000225696 EFHD1Q9BUP0 239 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 SLC39A8Q9C0K1 460 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 TMEM165Q9HC07 324 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 MRPL40Q9NQ50 206 aaKnown RBP12.43□□□□□ -0.42
NUP88-201ENST00000225696 SLC38A7Q9NVC3 462 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 DOLKQ9UPQ8 538 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 AAR2Q9Y312 384 aaKnown RBP12.43□□□□□ -0.42
NUP88-201ENST00000225696 ZFC3H1O60293 1989 aaKnown RBP12.43□□□□□ -0.42
NUP88-201ENST00000225696 COL1A2P08123 1366 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 PDCD11Q14690 1871 aaKnown RBP12.43□□□□□ -0.42
NUP88-201ENST00000225696 RNF103-CHMP3A0A140T963 221 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 TRIM64A6NGJ6 449 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 HHLA1C9JL84 531 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 PTGESO14684 152 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 GABRDO14764 452 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 LTA4HP09960 611 aaKnown RBP12.43□□□□□ -0.42
NUP88-201ENST00000225696 DARSP14868 501 aaKnown RBP12.43□□□□□ -0.42
NUP88-201ENST00000225696 SLC6A2P23975 617 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 DNAJB1P25685 340 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 CCT8P50990 548 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 AIF1P55008 147 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 NUP107P57740 925 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 PLCL1Q15111 1095 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 KIF19Q2TAC6 998 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 ARL13BQ3SXY8 428 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 PYCR3Q53H96 274 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 ZNF678Q5SXM1 525 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 OGFOD2Q6N063 350 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 RANBP10Q6VN20 620 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 ISCA2Q86U28 154 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 IFNEQ86WN2 208 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 ADGRG5Q8IZF4 528 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 OR52K2Q8NGK3 314 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 RNF34Q969K3 372 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 PGAP3Q96FM1 320 aaPredicted RBP12.43□□□□□ -0.42
NUP88-201ENST00000225696 TSGA13Q96PP4 275 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 FCRL5Q96RD9 977 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 PAIP1Q9H074 479 aaKnown RBP12.43□□□□□ -0.42
NUP88-201ENST00000225696 UPF3AQ9H1J1 476 aaKnown RBP12.43□□□□□ -0.42
NUP88-201ENST00000225696 HIPK3Q9H422 1215 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 EML4Q9HC35 981 aaKnown RBP12.43□□□□□ -0.42
NUP88-201ENST00000225696 VPS45Q9NRW7 570 aa12.43□□□□□ -0.42
NUP88-201ENST00000225696 FNDC1Q4ZHG4 1894 aaPredicted RBP12.43□□□□□ -0.42
NUP88-201ENST00000225696 FAM163BP0C2L3 166 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 SMPD1P17405 629 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 ARSDP51689 593 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 BNIP3Q12983 259 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 RABL3Q5HYI8 236 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 HECTD2Q5U5R9 776 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 AGAP9Q5VTM2 703 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 TBPL2Q6SJ96 375 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 PATL1Q86TB9 770 aaKnown RBP12.42□□□□□ -0.42
NUP88-201ENST00000225696 CAMK1DQ8IU85 385 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 ATPAF2Q8N5M1 289 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 SMG8Q8ND04 991 aaKnown RBP12.42□□□□□ -0.42
NUP88-201ENST00000225696 TBC1D15Q8TC07 691 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 ADAMTS16Q8TE57 1224 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 HDAC10Q969S8 669 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 TEX37Q96LM6 180 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 IL12RB2Q99665 862 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 FSD1LQ9BXM9 530 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 KATNBL1Q9H079 304 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 TUBB1Q9H4B7 451 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 POLR1BQ9H9Y6 1135 aa12.42□□□□□ -0.42
NUP88-201ENST00000225696 POLR3BQ9NW08 1133 aaPredicted RBP12.42□□□□□ -0.42
NUP88-201ENST00000225696 SLAMF8Q9P0V8 285 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms