RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 TDRPQ86YL5 185 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 UNC5BQ8IZJ1 945 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 VCPIP1Q96JH7 1222 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 DHRS1Q96LJ7 313 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 GAL3ST4Q96RP7 486 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 FNDC11Q9BVV2 318 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 LDHAL6BQ9BYZ2 381 aaPredicted RBP6.15□□□□□ -1.42
SCN1A-217ENST00000637988 AGO1Q9UL18 857 aaKnown RBP6.15□□□□□ -1.42
SCN1A-217ENST00000637988 ZNF726A6NNF4 738 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 SH3BGRLO75368 114 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 CLDN11O75508 207 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 ARL3P36405 182 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 OTUD4Q01804 1114 aaKnown RBP6.15□□□□□ -1.42
SCN1A-217ENST00000637988 DLG1Q12959 904 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 RAPSNQ13702 412 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 RABL6Q3YEC7 729 aaPredicted RBP6.15□□□□□ -1.42
SCN1A-217ENST00000637988 KLHDC7AQ5VTJ3 777 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 LRIG3Q6UXM1 1119 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 TSHZ1Q6ZSZ6 1077 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 CXXC5Q7LFL8 322 aaKnown RBP6.15□□□□□ -1.42
SCN1A-217ENST00000637988 ADAMTSL2Q86TH1 951 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 RPAINQ86UA6 219 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 PACS2Q86VP3 889 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 WNT8BQ93098 351 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 NSL1Q96IY1 281 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 TLR9Q9NR96 1032 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 CLN6Q9NWW5 311 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 SERTAD3Q9UJW9 196 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 HPSEQ9Y251 543 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 ZNF638Q14966 1978 aaKnown RBP6.15□□□□□ -1.42
SCN1A-217ENST00000637988 ALPPP05187 535 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 CCNA2P20248 432 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 COILP38432 576 aaPredicted RBP6.15□□□□□ -1.42
SCN1A-217ENST00000637988 POLD2P49005 469 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 RBPJQ06330 500 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 KLHL12Q53G59 568 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 BICRALQ6AI39 1079 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 PYHIN1Q6K0P9 492 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 CNKSR3Q6P9H4 555 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 ZNF227Q86WZ6 799 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 CCDC33Q8N5R6 958 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 OR2AJ1Q8NGZ0 328 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 SMPDL3BQ92485 455 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 DNASE1L2Q92874 299 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 ERP27Q96DN0 273 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 TRIM51Q9BSJ1 452 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 SUSD2Q9UGT4 822 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 NENFQ9UMX5 172 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 CLCA3PQ9Y6N3 262 aa6.15□□□□□ -1.42
SCN1A-217ENST00000637988 ULK1O75385 1050 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 GZMAP12544 262 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 UGT1A1P22309 533 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 HNF4AP41235 474 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 WASP42768 502 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 GDI2P50395 445 aaKnown RBP6.15□□□□□ -1.43
SCN1A-217ENST00000637988 CAP1Q01518 475 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 HPS6Q86YV9 775 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 SETD6Q8TBK2 473 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 IRF7Q92985 503 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 PLD4Q96BZ4 506 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 MYO19Q96H55 970 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 PDCD2LQ9BRP1 358 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 PIF1Q9H611 641 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 ANKZF1Q9H8Y5 726 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 B4GALT7Q9UBV7 327 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 SPIN1Q9Y657 262 aaPredicted RBP6.15□□□□□ -1.43
SCN1A-217ENST00000637988 AGLP35573 1532 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 MYH1P12882 1939 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 FAM86C2PA6NEL3 165 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 MYL9P24844 172 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 MTHFRP42898 656 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 PRR5P85299 388 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 IL5RAQ01344 420 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 EPC2Q52LR7 807 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 INO80DQ53TQ3 878 aaPredicted RBP6.15□□□□□ -1.43
SCN1A-217ENST00000637988 ZNF57Q68EA5 555 aaPredicted RBP6.15□□□□□ -1.43
SCN1A-217ENST00000637988 ATG9AQ7Z3C6 839 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 FBXO15Q8NCQ5 510 aaPredicted RBP6.15□□□□□ -1.43
SCN1A-217ENST00000637988 LPPQ93052 612 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 ART5Q96L15 291 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 VPS35Q96QK1 796 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 TMEM27Q9HBJ8 222 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 PCDH18Q9HCL0 1135 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 TIGARQ9NQ88 270 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 MYH15Q9Y2K3 1946 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 TRDMT1O14717 391 aaKnown RBP6.15□□□□□ -1.43
SCN1A-217ENST00000637988 SLC31A1O15431 190 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 ERAL1O75616 437 aaKnown RBP6.15□□□□□ -1.43
SCN1A-217ENST00000637988 RECQL5O94762 991 aaPredicted RBP6.15□□□□□ -1.43
SCN1A-217ENST00000637988 SEC31AO94979 1220 aaKnown RBP6.15□□□□□ -1.43
SCN1A-217ENST00000637988 SYNGR4O95473 234 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 C22orf31O95567 290 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 MT-ND5P03915 603 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 CCNB1P14635 433 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 JUPP14923 745 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 SLC6A2P23975 617 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 CXCR3P49682 368 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 UGT2B15P54855 530 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 MTTPP55157 894 aa6.15□□□□□ -1.43
SCN1A-217ENST00000637988 ZSWIM7Q19AV6 140 aa6.15□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms