RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 RAPGEF5Q92565 580 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 MAML1Q92585 1016 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 TSGA13Q96PP4 275 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 COQ6Q9Y2Z9 468 aa19.36■□□□□ 0.69
CLN3-260ENST00000637578 ASPMQ8IZT6 3477 aa19.35■□□□□ 0.69
CLN3-260ENST00000637578 A0A1W2PQ67 120 aa19.35■□□□□ 0.69
CLN3-260ENST00000637578 C3orf70A6NLC5 250 aaPredicted RBP19.35■□□□□ 0.69
CLN3-260ENST00000637578 SCAMP1O15126 338 aa19.35■□□□□ 0.69
CLN3-260ENST00000637578 PRKCGP05129 697 aa19.35■□□□□ 0.69
CLN3-260ENST00000637578 CCNCP24863 283 aa19.35■□□□□ 0.69
CLN3-260ENST00000637578 PTK2BQ14289 1009 aa19.35■□□□□ 0.69
CLN3-260ENST00000637578 IRF4Q15306 451 aa19.35■□□□□ 0.69
CLN3-260ENST00000637578 LRRC38Q5VT99 294 aa19.35■□□□□ 0.69
CLN3-260ENST00000637578 LIPIQ6XZB0 460 aa19.35■□□□□ 0.69
CLN3-260ENST00000637578 DPPA4Q7L190 304 aa19.35■□□□□ 0.69
CLN3-260ENST00000637578 GALNT15Q8N3T1 639 aa19.35■□□□□ 0.69
CLN3-260ENST00000637578 TPCN2Q8NHX9 752 aa19.35■□□□□ 0.69
CLN3-260ENST00000637578 GOLPH3Q9H4A6 298 aa19.35■□□□□ 0.69
CLN3-260ENST00000637578 NLGN3Q9NZ94 848 aa19.35■□□□□ 0.69
CLN3-260ENST00000637578 HYOU1Q9Y4L1 999 aa19.35■□□□□ 0.69
CLN3-260ENST00000637578 PCDHGC4Q9Y5F7 938 aa19.35■□□□□ 0.69
CLN3-260ENST00000637578 CSNK1G3Q9Y6M4 447 aa19.35■□□□□ 0.69
CLN3-260ENST00000637578 PTPRBP23467 1997 aa19.35■□□□□ 0.69
CLN3-260ENST00000637578 KMT2BQ9UMN6 2715 aaPredicted RBP19.34■□□□□ 0.69
CLN3-260ENST00000637578 PLXNB3Q9ULL4 1909 aa19.34■□□□□ 0.69
CLN3-260ENST00000637578 MACROD2A1Z1Q3 448 aa19.34■□□□□ 0.69
CLN3-260ENST00000637578 ACP1P24666 158 aa19.34■□□□□ 0.69
CLN3-260ENST00000637578 PEX5P50542 639 aa19.34■□□□□ 0.69
CLN3-260ENST00000637578 NAP1L1P55209 391 aaKnown RBP19.34■□□□□ 0.69
CLN3-260ENST00000637578 SLC10A2Q12908 348 aaPredicted RBP19.34■□□□□ 0.69
CLN3-260ENST00000637578 ILKQ13418 452 aa19.34■□□□□ 0.69
CLN3-260ENST00000637578 ALG1LQ6GMV1 187 aa19.34■□□□□ 0.69
CLN3-260ENST00000637578 RNF157Q96PX1 679 aa19.34■□□□□ 0.69
CLN3-260ENST00000637578 SCUBE2Q9NQ36 999 aa19.34■□□□□ 0.69
CLN3-260ENST00000637578 PNMA8BQ9ULN7 279 aaPredicted RBP19.34■□□□□ 0.69
CLN3-260ENST00000637578 PPP2R2CQ9Y2T4 447 aa19.34■□□□□ 0.69
CLN3-260ENST00000637578 USP24Q9UPU5 2620 aa19.34■□□□□ 0.69
CLN3-260ENST00000637578 NEMP2A6NFY4 417 aa19.33■□□□□ 0.69
CLN3-260ENST00000637578 MATN3O15232 486 aa19.33■□□□□ 0.69
CLN3-260ENST00000637578 RFPL3O75679 317 aa19.33■□□□□ 0.69
CLN3-260ENST00000637578 GM2AP17900 193 aa19.33■□□□□ 0.69
CLN3-260ENST00000637578 SLC1A1P43005 524 aa19.33■□□□□ 0.69
CLN3-260ENST00000637578 MAXP61244 160 aa19.33■□□□□ 0.69
CLN3-260ENST00000637578 SEMG2Q02383 582 aa19.33■□□□□ 0.69
CLN3-260ENST00000637578 GBE1Q04446 702 aa19.33■□□□□ 0.69
CLN3-260ENST00000637578 IFI16Q16666 785 aaKnown RBP19.33■□□□□ 0.69
CLN3-260ENST00000637578 TIGD7Q6NT04 549 aaPredicted RBP19.33■□□□□ 0.69
CLN3-260ENST00000637578 C11orf63Q6NUN7 778 aa19.33■□□□□ 0.69
CLN3-260ENST00000637578 DHRS13Q6UX07 377 aa19.33■□□□□ 0.69
CLN3-260ENST00000637578 MACC1Q6ZN28 852 aa19.33■□□□□ 0.69
CLN3-260ENST00000637578 CBARPQ8N350 705 aaPredicted RBP19.33■□□□□ 0.69
CLN3-260ENST00000637578 FAM181AQ8N9Y4 354 aa19.33■□□□□ 0.69
CLN3-260ENST00000637578 ZNF548Q8NEK5 533 aaPredicted RBP19.33■□□□□ 0.69
CLN3-260ENST00000637578 TBATAQ96M53 351 aa19.33■□□□□ 0.69
CLN3-260ENST00000637578 TSGA10Q9BZW7 698 aa19.33■□□□□ 0.69
CLN3-260ENST00000637578 AMACRQ9UHK6 382 aa19.33■□□□□ 0.69
CLN3-260ENST00000637578 PPIL1Q9Y3C6 166 aa19.33■□□□□ 0.69
CLN3-260ENST00000637578 H3BM21 787 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 JUNDP17535 347 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 COMTP21964 271 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 THOP1P52888 689 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 TRAF2Q12933 501 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 TMPRSS12Q86WS5 348 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 BTN2A2Q8WVV5 523 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 CALR3Q96L12 384 aaKnown RBP19.32■□□□□ 0.68
CLN3-260ENST00000637578 DTLQ9NZJ0 730 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 ALG6Q9Y672 507 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 LRRK1Q38SD2 2015 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 K7ESM1 405 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 SPOPO43791 374 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 LZTS3O60299 673 aaPredicted RBP19.32■□□□□ 0.68
CLN3-260ENST00000637578 RECQL5O94762 991 aaPredicted RBP19.32■□□□□ 0.68
CLN3-260ENST00000637578 PGLSO95336 258 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 CKMT1AP12532 417 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 MX2P20592 715 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 CES1P23141 567 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 CAMK2BQ13554 666 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 INPP5AQ14642 412 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 SLC9A4Q6AI14 798 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 DAAM2Q86T65 1068 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 PLD5Q8N7P1 536 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 HDAC11Q96DB2 347 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 DUSP23Q9BVJ7 150 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 NT5MQ9NPB1 228 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 PHTF1Q9UMS5 762 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 GUCA1BQ9UMX6 200 aa19.32■□□□□ 0.68
CLN3-260ENST00000637578 ANKRD36A6QL64 1941 aa19.31■□□□□ 0.68
CLN3-260ENST00000637578 IGF2RP11717 2491 aa19.31■□□□□ 0.68
CLN3-260ENST00000637578 LY6G6EA0A0G2JKS1 128 aa19.31■□□□□ 0.68
CLN3-260ENST00000637578 LRRD1A4D1F6 860 aa19.31■□□□□ 0.68
CLN3-260ENST00000637578 GRID2IPA4D2P6 1211 aa19.31■□□□□ 0.68
CLN3-260ENST00000637578 TPP1O14773 563 aa19.31■□□□□ 0.68
CLN3-260ENST00000637578 FFAR2O15552 330 aa19.31■□□□□ 0.68
CLN3-260ENST00000637578 AQP9O43315 295 aa19.31■□□□□ 0.68
CLN3-260ENST00000637578 KRT86O43790 486 aa19.31■□□□□ 0.68
CLN3-260ENST00000637578 FZD6O60353 706 aa19.31■□□□□ 0.68
CLN3-260ENST00000637578 MAP3K6O95382 1288 aa19.31■□□□□ 0.68
CLN3-260ENST00000637578 ELFN1P0C7U0 828 aa19.31■□□□□ 0.68
CLN3-260ENST00000637578 MTM1Q13496 603 aa19.31■□□□□ 0.68
CLN3-260ENST00000637578 IHHQ14623 411 aa19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms