RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 MROH9Q5TGP6 573 aa20.2■□□□□ 0.82
CLN3-250ENST00000636839 TTC19Q6DKK2 380 aaPredicted RBP20.2■□□□□ 0.82
CLN3-250ENST00000636839 MTSS1LQ765P7 747 aa20.2■□□□□ 0.82
CLN3-250ENST00000636839 MARK2Q7KZI7 788 aaKnown RBP20.2■□□□□ 0.82
CLN3-250ENST00000636839 C4orf33Q8N1A6 199 aa20.2■□□□□ 0.82
CLN3-250ENST00000636839 RIBC1Q8N443 379 aaPredicted RBP20.2■□□□□ 0.82
CLN3-250ENST00000636839 HDAC10Q969S8 669 aa20.2■□□□□ 0.82
CLN3-250ENST00000636839 EID2BQ96D98 161 aa20.2■□□□□ 0.82
CLN3-250ENST00000636839 ATXN7L3BQ96GX2 97 aa20.2■□□□□ 0.82
CLN3-250ENST00000636839 TBATAQ96M53 351 aa20.2■□□□□ 0.82
CLN3-250ENST00000636839 PLA2G4CQ9UP65 541 aa20.2■□□□□ 0.82
CLN3-250ENST00000636839 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP20.19■□□□□ 0.82
CLN3-250ENST00000636839 POP4O95707 220 aaKnown RBP20.19■□□□□ 0.82
CLN3-250ENST00000636839 CTSLP07711 333 aa20.19■□□□□ 0.82
CLN3-250ENST00000636839 CTBP1Q13363 440 aa20.19■□□□□ 0.82
CLN3-250ENST00000636839 MPP2Q14168 576 aa20.19■□□□□ 0.82
CLN3-250ENST00000636839 RASA2Q15283 850 aa20.19■□□□□ 0.82
CLN3-250ENST00000636839 IER5LQ5T953 404 aa20.19■□□□□ 0.82
CLN3-250ENST00000636839 PACS1Q6VY07 963 aa20.19■□□□□ 0.82
CLN3-250ENST00000636839 GLT6D1Q7Z4J2 308 aa20.19■□□□□ 0.82
CLN3-250ENST00000636839 PAF1Q8N7H5 531 aa20.19■□□□□ 0.82
CLN3-250ENST00000636839 SERAC1Q96JX3 654 aa20.19■□□□□ 0.82
CLN3-250ENST00000636839 ACOX2Q99424 681 aa20.19■□□□□ 0.82
CLN3-250ENST00000636839 BPIFA1Q9NP55 256 aa20.19■□□□□ 0.82
CLN3-250ENST00000636839 TRIM49D1C9J1S8 452 aa20.19■□□□□ 0.82
CLN3-250ENST00000636839 KAT7O95251 611 aa20.19■□□□□ 0.82
CLN3-250ENST00000636839 FRG1Q14331 258 aaKnown RBP20.19■□□□□ 0.82
CLN3-250ENST00000636839 STRA8Q7Z7C7 330 aa20.19■□□□□ 0.82
CLN3-250ENST00000636839 LDB1Q86U70 411 aaPredicted RBP20.19■□□□□ 0.82
CLN3-250ENST00000636839 CDKL2Q92772 493 aa20.19■□□□□ 0.82
CLN3-250ENST00000636839 GUCD1Q96NT3 240 aa20.19■□□□□ 0.82
CLN3-250ENST00000636839 SUV39H2Q9H5I1 410 aa20.19■□□□□ 0.82
CLN3-250ENST00000636839 PPCSQ9HAB8 311 aa20.19■□□□□ 0.82
CLN3-250ENST00000636839 ADAM21Q9UKJ8 722 aa20.19■□□□□ 0.82
CLN3-250ENST00000636839 SPAG7O75391 227 aa20.18■□□□□ 0.82
CLN3-250ENST00000636839 SRPRAP08240 638 aaKnown RBP20.18■□□□□ 0.82
CLN3-250ENST00000636839 PRSS56P0CW18 603 aa20.18■□□□□ 0.82
CLN3-250ENST00000636839 GABRB3P28472 473 aa20.18■□□□□ 0.82
CLN3-250ENST00000636839 SERPINA4P29622 427 aa20.18■□□□□ 0.82
CLN3-250ENST00000636839 NNMTP40261 264 aa20.18■□□□□ 0.82
CLN3-250ENST00000636839 PPP2R2AP63151 447 aa20.18■□□□□ 0.82
CLN3-250ENST00000636839 MPP1Q00013 466 aa20.18■□□□□ 0.82
CLN3-250ENST00000636839 ZNF234Q14588 700 aa20.18■□□□□ 0.82
CLN3-250ENST00000636839 FNDC3BQ53EP0 1204 aaKnown RBP20.18■□□□□ 0.82
CLN3-250ENST00000636839 ARSIQ5FYB1 569 aa20.18■□□□□ 0.82
CLN3-250ENST00000636839 TXNDC11Q6PKC3 985 aa20.18■□□□□ 0.82
CLN3-250ENST00000636839 PTAR1Q7Z6K3 402 aaPredicted RBP20.18■□□□□ 0.82
CLN3-250ENST00000636839 ACVR1CQ8NER5 493 aa20.18■□□□□ 0.82
CLN3-250ENST00000636839 OR4K2Q8NGD2 314 aa20.18■□□□□ 0.82
CLN3-250ENST00000636839 OR6P1Q8NGX9 317 aa20.18■□□□□ 0.82
CLN3-250ENST00000636839 SELENOSQ9BQE4 189 aa20.18■□□□□ 0.82
CLN3-250ENST00000636839 TRABDQ9H4I3 376 aa20.18■□□□□ 0.82
CLN3-250ENST00000636839 WASF2Q9Y6W5 498 aa20.18■□□□□ 0.82
CLN3-250ENST00000636839 LEFTY1O75610 366 aa20.17■□□□□ 0.82
CLN3-250ENST00000636839 ASLP04424 464 aa20.17■□□□□ 0.82
CLN3-250ENST00000636839 ASGR2P07307 311 aa20.17■□□□□ 0.82
CLN3-250ENST00000636839 HNF1BP35680 557 aa20.17■□□□□ 0.82
CLN3-250ENST00000636839 MAPK8P45983 427 aa20.17■□□□□ 0.82
CLN3-250ENST00000636839 GALK1P51570 392 aa20.17■□□□□ 0.82
CLN3-250ENST00000636839 ZNF140P52738 457 aaPredicted RBP20.17■□□□□ 0.82
CLN3-250ENST00000636839 PGGT1BP53609 377 aa20.17■□□□□ 0.82
CLN3-250ENST00000636839 PDPK2PQ6A1A2 396 aa20.17■□□□□ 0.82
CLN3-250ENST00000636839 KIAA0930Q6ICG6 404 aaPredicted RBP20.17■□□□□ 0.82
CLN3-250ENST00000636839 LYSMD3Q7Z3D4 306 aa20.17■□□□□ 0.82
CLN3-250ENST00000636839 SPNS2Q8IVW8 549 aa20.17■□□□□ 0.82
CLN3-250ENST00000636839 KLHL32Q96NJ5 620 aa20.17■□□□□ 0.82
CLN3-250ENST00000636839 STMN4Q9H169 189 aaPredicted RBP20.17■□□□□ 0.82
CLN3-250ENST00000636839 MARCH4Q9P2E8 410 aaPredicted RBP20.17■□□□□ 0.82
CLN3-250ENST00000636839 ZNF180Q9UJW8 692 aa20.17■□□□□ 0.82
CLN3-250ENST00000636839 FNDC3AQ9Y2H6 1198 aaKnown RBP20.17■□□□□ 0.82
CLN3-250ENST00000636839 GOLGA8CPA6NN73 597 aa20.17■□□□□ 0.82
CLN3-250ENST00000636839 SOCS5O75159 536 aa20.17■□□□□ 0.82
CLN3-250ENST00000636839 PAPSS2O95340 614 aaPredicted RBP20.17■□□□□ 0.82
CLN3-250ENST00000636839 KRT4P19013 534 aa20.17■□□□□ 0.82
CLN3-250ENST00000636839 RECQLP46063 649 aaPredicted RBP20.17■□□□□ 0.82
CLN3-250ENST00000636839 METAP1P53582 386 aa20.17■□□□□ 0.82
CLN3-250ENST00000636839 ZNF789Q5FWF6 425 aa20.17■□□□□ 0.82
CLN3-250ENST00000636839 TTC30BQ8N4P2 665 aa20.17■□□□□ 0.82
CLN3-250ENST00000636839 EZH1Q92800 747 aaPredicted RBP20.17■□□□□ 0.82
CLN3-250ENST00000636839 CPEB1Q9BZB8 566 aaKnown RBP20.17■□□□□ 0.82
CLN3-250ENST00000636839 KCNK12Q9HB15 430 aa20.17■□□□□ 0.82
CLN3-250ENST00000636839 POLR3BQ9NW08 1133 aaPredicted RBP20.17■□□□□ 0.82
CLN3-250ENST00000636839 CCDC162PA2VCL2 907 aa20.16■□□□□ 0.82
CLN3-250ENST00000636839 BRAFP15056 766 aa20.16■□□□□ 0.82
CLN3-250ENST00000636839 CA4P22748 312 aa20.16■□□□□ 0.82
CLN3-250ENST00000636839 GMPRP36959 345 aa20.16■□□□□ 0.82
CLN3-250ENST00000636839 SLC1A2P43004 574 aa20.16■□□□□ 0.82
CLN3-250ENST00000636839 GRIA4P48058 902 aa20.16■□□□□ 0.82
CLN3-250ENST00000636839 ST8SIA6P61647 398 aa20.16■□□□□ 0.82
CLN3-250ENST00000636839 SMAD4Q13485 552 aaKnown RBP20.16■□□□□ 0.82
CLN3-250ENST00000636839 TAF1AQ15573 450 aaPredicted RBP20.16■□□□□ 0.82
CLN3-250ENST00000636839 EGFLAMQ63HQ2 1017 aa20.16■□□□□ 0.82
CLN3-250ENST00000636839 NEPROQ6NW34 567 aa20.16■□□□□ 0.82
CLN3-250ENST00000636839 KDM7AQ6ZMT4 941 aa20.16■□□□□ 0.82
CLN3-250ENST00000636839 TSPAN33Q86UF1 283 aa20.16■□□□□ 0.82
CLN3-250ENST00000636839 ECHDC3Q96DC8 303 aa20.16■□□□□ 0.82
CLN3-250ENST00000636839 HEPHQ9BQS7 1158 aa20.16■□□□□ 0.82
CLN3-250ENST00000636839 C12orf65Q9H3J6 166 aaKnown RBP20.16■□□□□ 0.82
CLN3-250ENST00000636839 MLXIPLQ9NP71 852 aa20.16■□□□□ 0.82
CLN3-250ENST00000636839 KCNK9Q9NPC2 374 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms