RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 PLAC1Q9HBJ0 212 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 ERVK-5Q9HDB9 667 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 KCNK9Q9NPC2 374 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 PNRC2Q9NPJ4 139 aaKnown RBP1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 ENTPD7Q9NQZ7 604 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 RXFP3Q9NSD7 469 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 TMLHEQ9NVH6 421 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 SRP68Q9UHB9 627 aaKnown RBP1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 RCE1Q9Y256 329 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 DTX4Q9Y2E6 619 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 DERAQ9Y315 318 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 PKP3Q9Y446 797 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 PCDHGB3Q9Y5G1 929 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 PCDHAC2Q9Y5I4 1007 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 ADAMTS7Q9UKP4 1686 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 MYH7P12883 1935 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 AKAP11Q9UKA4 1901 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 LAMB1P07942 1786 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 MAST2Q6P0Q8 1798 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 CCNB3Q8WWL7 1395 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 KIF15Q9NS87 1388 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 MGAMO43451 1857 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 DOCK7Q96N67 2140 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 MYOM2P54296 1465 aa1.18□□□□□ -2.22
SMARCB1-209ENST00000635578 ADGRB1O14514 1584 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 EP400Q96L91 3159 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 ATG2AQ2TAZ0 1938 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 ABCC5O15440 1437 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 NOS1P29475 1434 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 SNED1Q8TER0 1413 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 ADGRL3Q9HAR2 1447 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 RIMS2Q9UQ26 1411 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 PAPPA2Q9BXP8 1791 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 SLIT3O75094 1523 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 A0A096LPK6 155 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 GXYLT2A0PJZ3 443 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 TARSL2A2RTX5 802 aaKnown RBP1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 CLEC18AA5D8T8 446 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 OR6C68A6NDL8 312 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 DDTLA6NHG4 134 aaPredicted RBP1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 KDM4EB2RXH2 506 aaPredicted RBP1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 KCNJ18B7U540 433 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 BMPR1BO00238 502 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 KLK10O43240 276 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 DHHO43323 396 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 TPD52L2O43399 206 aaKnown RBP1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 ITM2AO43736 263 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 KIF1CO43896 1103 aaKnown RBP1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 ATP2C2O75185 946 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 NEURL1O76050 574 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 SGPL1O95470 568 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 GLUD1P00367 558 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 APOHP02749 345 aaPredicted RBP1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 LCATP04180 440 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 SNRNP70P08621 437 aaKnown RBP1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 F7P08709 466 aaPredicted RBP1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 CSF1P09603 554 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 DHRS4L1P0CG22 281 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 CKMT1AP12532 417 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 ACP5P13686 325 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 TNNT1P13805 278 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 CHRNB2P17787 502 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 CNTFP26441 200 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 CST5P28325 142 aaPredicted RBP1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 HOXD3P31249 432 aaPredicted RBP1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 HOXC13P31276 330 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 TNFSF8P32971 234 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 ADD2P35612 726 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 AVPR1AP37288 418 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 PNPLA4P41247 253 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 DPP6P42658 865 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 PTPN9P43378 593 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 GLIPR1P48060 266 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 PPP3CCP48454 512 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 GLUD2P49448 558 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 CLCNKBP51801 687 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 PNLIPRP1P54315 467 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 ATP12AP54707 1039 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 CDH12P55289 794 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 KRTAP10-8P60410 259 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 ERVK11-1P61568 191 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 RHAGQ02094 409 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 ZBTB16Q05516 673 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 ST3GAL1Q11201 340 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 GRSF1Q12849 480 aaKnown RBP eCLIP1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 ITGADQ13349 1161 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 CAPSQ13938 189 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 DCTN1Q14203 1278 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 VEPH1Q14D04 833 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 PLCB4Q15147 1175 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 KRTAP13-3Q3SY46 172 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 TRIM60Q495X7 471 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 FBXO43Q4G163 708 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 SYTL3Q4VX76 610 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 FSCBQ5H9T9 825 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 ZNF484Q5JVG2 852 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 SH2D4BQ5SQS7 431 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 DCAF12L2Q5VW00 463 aa1.17□□□□□ -2.22
SMARCB1-209ENST00000635578 TYW3Q6IPR3 259 aaKnown RBP1.17□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms