RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 TBCBQ99426 244 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 SMPD3Q9NY59 655 aaPredicted RBP5.06□□□□□ -1.6
VPS13D-214ENST00000620676 BIRC5O15392 142 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 SSX5O60225 188 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 IPO13O94829 963 aaKnown RBP5.06□□□□□ -1.6
VPS13D-214ENST00000620676 VNN2O95498 520 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 ORC2Q13416 577 aaPredicted RBP5.06□□□□□ -1.6
VPS13D-214ENST00000620676 WSCD2Q2TBF2 565 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 STRIP1Q5VSL9 837 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 ZNF677Q86XU0 584 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 OR6C4Q8NGE1 309 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 GRPEL2Q8TAA5 225 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 SNAPC3Q92966 411 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 OR2B2Q9GZK3 357 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 CLN6Q9NWW5 311 aa5.06□□□□□ -1.6
VPS13D-214ENST00000620676 THG1LQ9NWX6 298 aaKnown RBP5.06□□□□□ -1.6
VPS13D-214ENST00000620676 LOC100509620A0A075B734 347 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 GNAO1P09471 354 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 ARF4P18085 180 aaPredicted RBP5.05□□□□□ -1.6
VPS13D-214ENST00000620676 IGFBP5P24593 272 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 RPS9P46781 194 aaKnown RBP5.05□□□□□ -1.6
VPS13D-214ENST00000620676 CAPZA2P47755 286 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 DSG2Q14126 1118 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 ZC3HC1Q86WB0 502 aaKnown RBP5.05□□□□□ -1.6
VPS13D-214ENST00000620676 UBR7Q8N806 425 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 OR52K2Q8NGK3 314 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 RP9Q8TA86 221 aaKnown RBP5.05□□□□□ -1.6
VPS13D-214ENST00000620676 CENPIQ92674 756 aaPredicted RBP5.05□□□□□ -1.6
VPS13D-214ENST00000620676 CPNE1Q99829 537 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 GAL3ST1Q99999 423 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 ADAM30Q9UKF2 790 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 FHP07954 510 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 FXR2P51116 673 aaKnown RBP eCLIP5.05□□□□□ -1.67e-7■■■■□ 21.2
VPS13D-214ENST00000620676 ARHGDIBP52566 201 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 BNC1Q01954 994 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 URGCPQ8TCY9 931 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 CHURC1Q8WUH1 139 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 RPL26L1Q9UNX3 145 aaKnown RBP5.05□□□□□ -1.6
VPS13D-214ENST00000620676 ARP10275 920 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 TCF4P15884 667 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 PGAM1P18669 254 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 CCNG1P51959 295 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 SCRN3Q0VDG4 424 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 TMPRSS11AQ6ZMR5 421 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 BBS7Q8IWZ6 715 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 SLC43A3Q8NBI5 491 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 NEDD1Q8NHV4 660 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 KCNC2Q96PR1 638 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 AGAP2Q99490 1192 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 RAPGEFL1Q9UHV5 662 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 OR6C74A6NCV1 312 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 PTPN1P18031 435 aaKnown RBP5.05□□□□□ -1.6
VPS13D-214ENST00000620676 DRG2P55039 364 aaKnown RBP5.05□□□□□ -1.6
VPS13D-214ENST00000620676 PTSQ03393 145 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 CSTF1Q05048 431 aaKnown RBP5.05□□□□□ -1.6
VPS13D-214ENST00000620676 BNIP2Q12982 314 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 DSC3Q14574 896 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 ZNF460Q14592 562 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 IGSF11Q5DX21 431 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 ARL13AQ5H913 290 aaPredicted RBP5.05□□□□□ -1.6
VPS13D-214ENST00000620676 LDB1Q86U70 411 aaPredicted RBP5.05□□□□□ -1.6
VPS13D-214ENST00000620676 RASGEF1CQ8N431 466 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 C10orf53Q8N6V4 93 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 NPLOC4Q8TAT6 608 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 PDE10AQ9Y233 779 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 TSPOAP1O95153 1857 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 ALOX15BO15296 676 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 TBXAS1P24557 533 aaPredicted RBP5.05□□□□□ -1.6
VPS13D-214ENST00000620676 STIP1P31948 543 aaKnown RBP5.05□□□□□ -1.6
VPS13D-214ENST00000620676 CDKL1Q00532 357 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 RAD51Q06609 339 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 TRAPPC3LQ5T215 181 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 MOXD1Q6UVY6 613 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 C16orf86Q6ZW13 317 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 EIF1ADQ8N9N8 165 aaKnown RBP5.05□□□□□ -1.6
VPS13D-214ENST00000620676 TTYH1Q9H313 450 aaPredicted RBP5.05□□□□□ -1.6
VPS13D-214ENST00000620676 COMMD3Q9UBI1 195 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 NCKAP1Q9Y2A7 1128 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 SPO11Q9Y5K1 396 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 DUOX2Q9NRD8 1548 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 PSMB4P28070 264 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 CRABP2P29373 138 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 MIPP30301 263 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 RRM2P31350 389 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 AGAP9Q5VTM2 703 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 STX12Q86Y82 276 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 MPP5Q8N3R9 675 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 PIK3C3Q8NEB9 887 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 DNAJB8Q8NHS0 232 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 GTPBP3Q969Y2 492 aaKnown RBP5.05□□□□□ -1.6
VPS13D-214ENST00000620676 RPL10LQ96L21 214 aaKnown RBP5.05□□□□□ -1.6
VPS13D-214ENST00000620676 PDCD10Q9BUL8 212 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 KDELR1P24390 212 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 TROAPQ12815 778 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 FXNQ16595 210 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 RBM20Q5T481 1227 aaKnown RBP5.05□□□□□ -1.6
VPS13D-214ENST00000620676 PYHIN1Q6K0P9 492 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 ANKRD46Q86W74 232 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 ABRAQ8N0Z2 381 aa5.05□□□□□ -1.6
VPS13D-214ENST00000620676 SPERTQ8NA61 448 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms