RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 SOCS5O75159 536 aa16.09■□□□□ 0.17
BRCA1-228ENST00000618469 NEBLO76041 1014 aa16.09■□□□□ 0.17
BRCA1-228ENST00000618469 CPP00450 1065 aa16.09■□□□□ 0.17
BRCA1-228ENST00000618469 ITGAVP06756 1048 aa16.09■□□□□ 0.17
BRCA1-228ENST00000618469 C6P13671 934 aa16.09■□□□□ 0.17
BRCA1-228ENST00000618469 IGFALSP35858 605 aa16.09■□□□□ 0.17
BRCA1-228ENST00000618469 DYNLT1P63172 113 aa16.09■□□□□ 0.17
BRCA1-228ENST00000618469 ITKQ08881 620 aa16.09■□□□□ 0.17
BRCA1-228ENST00000618469 SLC10A2Q12908 348 aaPredicted RBP16.09■□□□□ 0.17
BRCA1-228ENST00000618469 TRAF2Q12933 501 aa16.09■□□□□ 0.17
BRCA1-228ENST00000618469 SLC9A4Q6AI14 798 aa16.09■□□□□ 0.17
BRCA1-228ENST00000618469 MFSD7Q6UXD7 560 aa16.09■□□□□ 0.17
BRCA1-228ENST00000618469 KDM7AQ6ZMT4 941 aa16.09■□□□□ 0.17
BRCA1-228ENST00000618469 Q6ZSR6 202 aa16.09■□□□□ 0.17
BRCA1-228ENST00000618469 TMEM139Q8IV31 216 aa16.09■□□□□ 0.17
BRCA1-228ENST00000618469 CCNYQ8ND76 341 aa16.09■□□□□ 0.17
BRCA1-228ENST00000618469 BAHD1Q8TBE0 780 aaPredicted RBP16.09■□□□□ 0.17
BRCA1-228ENST00000618469 FAM174AQ8TBP5 190 aa16.09■□□□□ 0.17
BRCA1-228ENST00000618469 ASB12Q8WXK4 309 aa16.09■□□□□ 0.17
BRCA1-228ENST00000618469 MAML1Q92585 1016 aa16.09■□□□□ 0.17
BRCA1-228ENST00000618469 C1QTNF7Q9BXJ2 289 aa16.09■□□□□ 0.17
BRCA1-228ENST00000618469 MAK16Q9BXY0 300 aaKnown RBP16.09■□□□□ 0.17
BRCA1-228ENST00000618469 POLR1EQ9GZS1 481 aaKnown RBP16.09■□□□□ 0.17
BRCA1-228ENST00000618469 TOR4AQ9NXH8 423 aa16.09■□□□□ 0.17
BRCA1-228ENST00000618469 IMPACTQ9P2X3 320 aa16.09■□□□□ 0.17
BRCA1-228ENST00000618469 SALL4Q9UJQ4 1053 aa16.09■□□□□ 0.17
BRCA1-228ENST00000618469 PCDHGC4Q9Y5F7 938 aa16.09■□□□□ 0.17
BRCA1-228ENST00000618469 HS3ST3A1Q9Y663 406 aa16.09■□□□□ 0.17
BRCA1-228ENST00000618469 ALG6Q9Y672 507 aa16.09■□□□□ 0.17
BRCA1-228ENST00000618469 COL5A1P20908 1838 aaPredicted RBP16.08■□□□□ 0.17
BRCA1-228ENST00000618469 GOLGA6L6A8MZA4 724 aa16.08■□□□□ 0.16
BRCA1-228ENST00000618469 MATN3O15232 486 aa16.08■□□□□ 0.16
BRCA1-228ENST00000618469 CCNCP24863 283 aa16.08■□□□□ 0.16
BRCA1-228ENST00000618469 RABIFP47224 123 aa16.08■□□□□ 0.16
BRCA1-228ENST00000618469 MARCKSL1P49006 195 aa16.08■□□□□ 0.16
BRCA1-228ENST00000618469 IRF4Q15306 451 aa16.08■□□□□ 0.16
BRCA1-228ENST00000618469 DBX2Q6ZNG2 339 aa16.08■□□□□ 0.16
BRCA1-228ENST00000618469 DAAM2Q86T65 1068 aa16.08■□□□□ 0.16
BRCA1-228ENST00000618469 KIAA1328Q86T90 577 aa16.08■□□□□ 0.16
BRCA1-228ENST00000618469 CCDC13Q8IYE1 715 aa16.08■□□□□ 0.16
BRCA1-228ENST00000618469 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.08■□□□□ 0.16
BRCA1-228ENST00000618469 TEX26Q8N6G2 289 aa16.08■□□□□ 0.16
BRCA1-228ENST00000618469 TPCN2Q8NHX9 752 aa16.08■□□□□ 0.16
BRCA1-228ENST00000618469 SAP25Q8TEE9 199 aa16.08■□□□□ 0.16
BRCA1-228ENST00000618469 BMFQ96LC9 184 aa16.08■□□□□ 0.16
BRCA1-228ENST00000618469 TSGA13Q96PP4 275 aa16.08■□□□□ 0.16
BRCA1-228ENST00000618469 LENG8Q96PV6 779 aaPredicted RBP16.08■□□□□ 0.16
BRCA1-228ENST00000618469 LGMNQ99538 433 aa16.08■□□□□ 0.16
BRCA1-228ENST00000618469 SEMA3CQ99985 751 aa16.08■□□□□ 0.16
BRCA1-228ENST00000618469 GPR27Q9NS67 375 aa16.08■□□□□ 0.16
BRCA1-228ENST00000618469 CABIN1Q9Y6J0 2220 aa16.07■□□□□ 0.16
BRCA1-228ENST00000618469 HTRA2O43464 458 aaPredicted RBP16.07■□□□□ 0.16
BRCA1-228ENST00000618469 HLA-DQB2P05538 268 aa16.07■□□□□ 0.16
BRCA1-228ENST00000618469 ELFN1P0C7U0 828 aa16.07■□□□□ 0.16
BRCA1-228ENST00000618469 CCNB1P14635 433 aa16.07■□□□□ 0.16
BRCA1-228ENST00000618469 ZFXP17010 805 aaPredicted RBP16.07■□□□□ 0.16
BRCA1-228ENST00000618469 RXRGP48443 463 aa16.07■□□□□ 0.16
BRCA1-228ENST00000618469 LIG3P49916 1009 aa16.07■□□□□ 0.16
BRCA1-228ENST00000618469 VAV2P52735 878 aa16.07■□□□□ 0.16
BRCA1-228ENST00000618469 NAP1L1P55209 391 aaKnown RBP16.07■□□□□ 0.16
BRCA1-228ENST00000618469 POLR2LP62875 67 aaKnown RBP16.07■□□□□ 0.16
BRCA1-228ENST00000618469 PPIDQ08752 370 aaKnown RBP16.07■□□□□ 0.16
BRCA1-228ENST00000618469 RALGDSQ12967 914 aa16.07■□□□□ 0.16
BRCA1-228ENST00000618469 BNIP3Q12983 259 aa16.07■□□□□ 0.16
BRCA1-228ENST00000618469 PDE1CQ14123 709 aaPredicted RBP16.07■□□□□ 0.16
BRCA1-228ENST00000618469 LLGL1Q15334 1064 aa16.07■□□□□ 0.16
BRCA1-228ENST00000618469 RALGPS1Q5JS13 557 aa16.07■□□□□ 0.16
BRCA1-228ENST00000618469 NPNTQ6UXI9 565 aa16.07■□□□□ 0.16
BRCA1-228ENST00000618469 DPPA4Q7L190 304 aa16.07■□□□□ 0.16
BRCA1-228ENST00000618469 TMPRSS7Q7RTY8 843 aa16.07■□□□□ 0.16
BRCA1-228ENST00000618469 CCDC50Q8IVM0 306 aa16.07■□□□□ 0.16
BRCA1-228ENST00000618469 TP53I13Q8NBR0 393 aaPredicted RBP16.07■□□□□ 0.16
BRCA1-228ENST00000618469 FATE1Q969F0 183 aa16.07■□□□□ 0.16
BRCA1-228ENST00000618469 CDC6Q99741 560 aa16.07■□□□□ 0.16
BRCA1-228ENST00000618469 DESI2Q9BSY9 194 aa16.07■□□□□ 0.16
BRCA1-228ENST00000618469 HAUS2Q9NVX0 235 aa16.07■□□□□ 0.16
BRCA1-228ENST00000618469 RBM22Q9NW64 420 aaKnown RBP eCLIP16.07■□□□□ 0.16
BRCA1-228ENST00000618469 FTSJ1Q9UET6 329 aa16.07■□□□□ 0.16
BRCA1-228ENST00000618469 HELZ2Q9BYK8 2649 aaKnown RBP16.07■□□□□ 0.16
BRCA1-228ENST00000618469 A0A1W2PQ67 120 aa16.06■□□□□ 0.16
BRCA1-228ENST00000618469 CYSRT1A8MQ03 144 aa16.06■□□□□ 0.16
BRCA1-228ENST00000618469 KCNK1O00180 336 aa16.06■□□□□ 0.16
BRCA1-228ENST00000618469 PPP1R12AO14974 1030 aaPredicted RBP16.06■□□□□ 0.16
BRCA1-228ENST00000618469 LZTS3O60299 673 aaPredicted RBP16.06■□□□□ 0.16
BRCA1-228ENST00000618469 C1QL1O75973 258 aa16.06■□□□□ 0.16
BRCA1-228ENST00000618469 ITPKBP27987 946 aa16.06■□□□□ 0.16
BRCA1-228ENST00000618469 CDKN2BP42772 138 aa16.06■□□□□ 0.16
BRCA1-228ENST00000618469 CLDN6P56747 220 aa16.06■□□□□ 0.16
BRCA1-228ENST00000618469 PFN3P60673 137 aa16.06■□□□□ 0.16
BRCA1-228ENST00000618469 DSC2Q02487 901 aa16.06■□□□□ 0.16
BRCA1-228ENST00000618469 AP1B1Q10567 949 aa16.06■□□□□ 0.16
BRCA1-228ENST00000618469 LRRC14Q15048 493 aa16.06■□□□□ 0.16
BRCA1-228ENST00000618469 PDK1Q15118 436 aa16.06■□□□□ 0.16
BRCA1-228ENST00000618469 ZNF542PQ5EBM4 170 aa16.06■□□□□ 0.16
BRCA1-228ENST00000618469 TPRG1LQ5T0D9 272 aa16.06■□□□□ 0.16
BRCA1-228ENST00000618469 ARMC12Q5T9G4 340 aa16.06■□□□□ 0.16
BRCA1-228ENST00000618469 KAZNQ674X7 775 aa16.06■□□□□ 0.16
BRCA1-228ENST00000618469 SPOCD1Q6ZMY3 1216 aa16.06■□□□□ 0.16
BRCA1-228ENST00000618469 GLRX5Q86SX6 157 aa16.06■□□□□ 0.16
BRCA1-228ENST00000618469 PARGQ86W56 976 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms