RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 POMCP01189 267 aa12.65□□□□□ -0.39
LIG1-221ENST00000613670 LILRA4P59901 499 aa12.65□□□□□ -0.39
LIG1-221ENST00000613670 PRKCQQ04759 706 aa12.65□□□□□ -0.39
LIG1-221ENST00000613670 TMEM214Q6NUQ4 689 aaKnown RBP12.65□□□□□ -0.39
LIG1-221ENST00000613670 ARHGAP36Q6ZRI8 547 aa12.65□□□□□ -0.39
LIG1-221ENST00000613670 TMEM135Q86UB9 458 aa12.65□□□□□ -0.39
LIG1-221ENST00000613670 CLYBLQ8N0X4 340 aa12.65□□□□□ -0.39
LIG1-221ENST00000613670 ULK4Q96C45 1275 aa12.65□□□□□ -0.39
LIG1-221ENST00000613670 RPRD1AQ96P16 312 aaPredicted RBP12.65□□□□□ -0.39
LIG1-221ENST00000613670 MLPHQ9BV36 600 aaPredicted RBP12.65□□□□□ -0.39
LIG1-221ENST00000613670 R3HDMLQ9H3Y0 253 aa12.65□□□□□ -0.39
LIG1-221ENST00000613670 SH3GLB1Q9Y371 365 aa12.65□□□□□ -0.39
LIG1-221ENST00000613670 RRN3P2A6NIE6 340 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 CFAP99D6REC4 459 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 AZIN1O14977 448 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 COL6A2P12110 1019 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 HK2P52789 917 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 HECTD2Q5U5R9 776 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 CYS1Q717R9 158 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 GLMNQ92990 594 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 ITFG2Q969R8 447 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 PRKD2Q9BZL6 878 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 ZNF696Q9H7X3 374 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 CASS4Q9NQ75 786 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 GMPR2Q9P2T1 348 aaKnown RBP12.64□□□□□ -0.39
LIG1-221ENST00000613670 EBF1Q9UH73 591 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 RIMS3Q9UJD0 308 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 SQORQ9Y6N5 450 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 A8MT66 165 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 FCGR1AP12314 374 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 FMO4P31512 558 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 NDST2P52849 883 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 DGCR6Q14129 220 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 TBC1D25Q3MII6 688 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 ANKS6Q68DC2 871 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 TAF2Q6P1X5 1199 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 LPPQ93052 612 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 MROH8Q9H579 483 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 NDFIP2Q9NV92 336 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 TRNAU1APQ9NX07 287 aaKnown RBP12.64□□□□□ -0.39
LIG1-221ENST00000613670 PLK2Q9NYY3 685 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 LIMD1Q9UGP4 676 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 AFF4Q9UHB7 1163 aaKnown RBP12.64□□□□□ -0.39
LIG1-221ENST00000613670 BLOC1S6Q9UL45 172 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 TCAF2A6NFQ2 919 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 BNIP3LO60238 219 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 MAN1A2O60476 641 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 SMIM18P0DKX4 95 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 CCNA2P20248 432 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 CDK9P50750 372 aaKnown RBP12.64□□□□□ -0.39
LIG1-221ENST00000613670 PPP1R8Q12972 351 aaKnown RBP12.64□□□□□ -0.39
LIG1-221ENST00000613670 ITGA7Q13683 1181 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 NR6A1Q15406 480 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 PRAMEF19Q5SWL8 479 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 KCTD8Q6ZWB6 473 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 FAM126BQ8IXS8 530 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 NPWQ8N729 165 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 SNX27Q96L92 541 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 FCRL2Q96LA5 508 aaPredicted RBP12.64□□□□□ -0.39
LIG1-221ENST00000613670 PPM1MQ96MI6 270 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 TXNRD2Q9NNW7 524 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 PTGDR2Q9Y5Y4 395 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 RAD54BQ9Y620 910 aa12.64□□□□□ -0.39
LIG1-221ENST00000613670 GOLGA4Q13439 2230 aaKnown RBP12.63□□□□□ -0.39
LIG1-221ENST00000613670 PIP5K1BO14986 540 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 PGK1P00558 417 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 PENKP01210 267 aaPredicted RBP12.63□□□□□ -0.39
LIG1-221ENST00000613670 THP07101 528 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 SLC2A3P11169 496 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 MAGEA3P43357 314 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 GNA12Q03113 381 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 MERTKQ12866 999 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 ZRANB3Q5FWF4 1079 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 TIGD7Q6NT04 549 aaPredicted RBP12.63□□□□□ -0.39
LIG1-221ENST00000613670 ANKRD13AQ8IZ07 590 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 KHSRPQ92945 711 aaKnown RBP eCLIP12.63□□□□□ -0.39
LIG1-221ENST00000613670 TCAF1Q9Y4C2 921 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 CDK5RAP2Q96SN8 1893 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 C7orf72A4D263 438 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 BTN3A1O00481 513 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 AURKAO14965 403 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 DEAF1O75398 565 aaPredicted RBP12.63□□□□□ -0.39
LIG1-221ENST00000613670 CLCN5P51795 746 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 RPL26P61254 145 aaKnown RBP12.63□□□□□ -0.39
LIG1-221ENST00000613670 EFEMP1Q12805 493 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 POLD3Q15054 466 aaPredicted RBP12.63□□□□□ -0.39
LIG1-221ENST00000613670 EGFLAMQ63HQ2 1017 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 GALNT18Q6P9A2 607 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 CLEC20AQ6ZU45 233 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 PIM3Q86V86 326 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 OSCP1Q8WVF1 389 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 APOL5Q9BWW9 433 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 RIC8BQ9NVN3 520 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 CPA4Q9UI42 421 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 NPHS1O60500 1241 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 SOAT2O75908 522 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 DAOAP59103 153 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 IL5RAQ01344 420 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 SULT2A1Q06520 285 aa12.63□□□□□ -0.39
LIG1-221ENST00000613670 HERC3Q15034 1050 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms