RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 AMPD1P23109 780 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 IL1R2P27930 398 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 SERPINA4P29622 427 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 PCK1P35558 622 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 TRIM23P36406 574 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 ZNF165P49910 485 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 RENBPP51606 427 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 PCBP4P57723 403 aaKnown RBP7.66□□□□□ -1.18
CUX1-219ENST00000606749 POLR2LP62875 67 aaKnown RBP7.66□□□□□ -1.18
CUX1-219ENST00000606749 BCL2L1Q07817 233 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 SLC10A7Q0GE19 358 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 RALGDSQ12967 914 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 MTM1Q13496 603 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 LBRQ14739 615 aaKnown RBP7.66□□□□□ -1.18
CUX1-219ENST00000606749 IQCB1Q15051 598 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 TCEA2Q15560 299 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 BOLA3Q53S33 107 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 C3orf38Q5JPI3 329 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 KCTD16Q68DU8 428 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 IGF2-ASQ6U949 168 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 GPR155Q7Z3F1 870 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 POLNQ7Z5Q5 900 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 LZTR1Q8N653 840 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 ATL2Q8NHH9 583 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 WDR48Q8TAF3 677 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 SCG3Q8WXD2 468 aaKnown RBP7.66□□□□□ -1.18
CUX1-219ENST00000606749 SLC39A7Q92504 469 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 ZNF653Q96CK0 615 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 WDR92Q96MX6 357 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 FCRL3Q96P31 734 aaPredicted RBP7.66□□□□□ -1.18
CUX1-219ENST00000606749 PSKH2Q96QS6 385 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 RBM15Q96T37 977 aaKnown RBP eCLIP7.66□□□□□ -1.18
CUX1-219ENST00000606749 LGMNQ99538 433 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 CCDC3Q9BQI4 270 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 CINPQ9BW66 212 aaPredicted RBP7.66□□□□□ -1.18
CUX1-219ENST00000606749 ZWILCHQ9H900 591 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 SP110Q9HB58 689 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 MRPL47Q9HD33 250 aaKnown RBP7.66□□□□□ -1.18
CUX1-219ENST00000606749 SIRPGQ9P1W8 387 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 SEPT3Q9UH03 358 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 RABGEF1Q9UJ41 708 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 GPR34Q9UPC5 381 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 DGKBQ9Y6T7 804 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 LRRK1Q38SD2 2015 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 RP1P56715 2156 aa7.66□□□□□ -1.18
CUX1-219ENST00000606749 TEX51A0A1B0GUA7 166 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 PMS2P1A4D2B8 440 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 TMEM202A6NGA9 273 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 CDRT15L2A8MXV6 281 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 H3BRJ5 948 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 TNFRSF10CO14798 259 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 HTRA2O43464 458 aaPredicted RBP7.65□□□□□ -1.18
CUX1-219ENST00000606749 PEX11BO96011 259 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 SERPINC1P01008 464 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 HOXC4P09017 264 aaPredicted RBP7.65□□□□□ -1.18
CUX1-219ENST00000606749 ELFN1P0C7U0 828 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 TCF4P15884 667 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 CR2P20023 1033 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 RBMS1P29558 406 aaKnown RBP7.65□□□□□ -1.18
CUX1-219ENST00000606749 ARL4AP40617 200 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 AP1S1P61966 158 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 CXADRP78310 365 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 CCL7P80098 99 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 SKOR1P84550 965 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 SPIDRQ14159 915 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 PIGHQ14442 188 aaPredicted RBP7.65□□□□□ -1.18
CUX1-219ENST00000606749 DPYSL2Q16555 572 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 SMTNL2Q2TAL5 461 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 FIGNQ5HY92 759 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 TMCO4Q5TGY1 634 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 CAVIN1Q6NZI2 390 aaKnown RBP7.65□□□□□ -1.18
CUX1-219ENST00000606749 PNCKQ6P2M8 343 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 OGFOD3Q6PK18 319 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 DPPA4Q7L190 304 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 GKN2Q86XP6 184 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 CBARPQ8N350 705 aaPredicted RBP7.65□□□□□ -1.18
CUX1-219ENST00000606749 PGBD5Q8N414 524 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 ARL10Q8N8L6 244 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 KYQ8NBH2 561 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 LSM14AQ8ND56 463 aaKnown RBP7.65□□□□□ -1.18
CUX1-219ENST00000606749 OR56A4Q8NGH8 313 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 WDR36Q8NI36 951 aaKnown RBP7.65□□□□□ -1.18
CUX1-219ENST00000606749 PCDH19Q8TAB3 1148 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 OR1E3Q8WZA6 343 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 SPOCK2Q92563 424 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 FUBP1Q96AE4 644 aaKnown RBP7.65□□□□□ -1.18
CUX1-219ENST00000606749 TRIM11Q96F44 468 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 ZNF599Q96NL3 588 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 FUCA2Q9BTY2 467 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 LGR4Q9BXB1 951 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 DPH1Q9BZG8 443 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 THSD1Q9NS62 852 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 ETNK2Q9NVF9 386 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 KLQ9UEF7 1012 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 SSUH2Q9Y2M2 353 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 PCDHGC4Q9Y5F7 938 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 PCDHGA8Q9Y5G5 932 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 BZW2Q9Y6E2 419 aaKnown RBP7.65□□□□□ -1.18
CUX1-219ENST00000606749 SCINQ9Y6U3 715 aa7.65□□□□□ -1.18
CUX1-219ENST00000606749 COL27A1Q8IZC6 1860 aaPredicted RBP7.64□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms