RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 CLDN2P57739 230 aa19.46■□□□□ 0.71
UPF1-212ENST00000601689 ALG1LQ6GMV1 187 aa19.46■□□□□ 0.71
UPF1-212ENST00000601689 CCDC70Q6NSX1 233 aa19.46■□□□□ 0.71
UPF1-212ENST00000601689 NPNTQ6UXI9 565 aa19.46■□□□□ 0.71
UPF1-212ENST00000601689 DPPA4Q7L190 304 aa19.46■□□□□ 0.71
UPF1-212ENST00000601689 NT5DC3Q86UY8 548 aa19.46■□□□□ 0.71
UPF1-212ENST00000601689 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP19.46■□□□□ 0.71
UPF1-212ENST00000601689 OLFM3Q96PB7 478 aa19.46■□□□□ 0.71
UPF1-212ENST00000601689 ALS2CR12Q96Q35 445 aa19.46■□□□□ 0.71
UPF1-212ENST00000601689 VAT1Q99536 393 aa19.46■□□□□ 0.71
UPF1-212ENST00000601689 IL12RB2Q99665 862 aa19.46■□□□□ 0.71
UPF1-212ENST00000601689 ADGRE3Q9BY15 652 aa19.46■□□□□ 0.71
UPF1-212ENST00000601689 GUCA1BQ9UMX6 200 aa19.46■□□□□ 0.71
UPF1-212ENST00000601689 CA5BQ9Y2D0 317 aa19.46■□□□□ 0.71
UPF1-212ENST00000601689 ADGRG1Q9Y653 693 aa19.46■□□□□ 0.71
UPF1-212ENST00000601689 APOC4-APOC2K7ER74 178 aa19.45■□□□□ 0.7
UPF1-212ENST00000601689 APOC2P02655 101 aa19.45■□□□□ 0.7
UPF1-212ENST00000601689 HLA-DQB2P05538 268 aa19.45■□□□□ 0.7
UPF1-212ENST00000601689 ITIH2P19823 946 aa19.45■□□□□ 0.7
UPF1-212ENST00000601689 VIPR1P32241 457 aa19.45■□□□□ 0.7
UPF1-212ENST00000601689 RPL26P61254 145 aaKnown RBP19.45■□□□□ 0.7
UPF1-212ENST00000601689 DSC2Q02487 901 aa19.45■□□□□ 0.7
UPF1-212ENST00000601689 FGL2Q14314 439 aa19.45■□□□□ 0.7
UPF1-212ENST00000601689 ACOX1Q15067 660 aa19.45■□□□□ 0.7
UPF1-212ENST00000601689 LLGL1Q15334 1064 aa19.45■□□□□ 0.7
UPF1-212ENST00000601689 GCNT7Q6ZNI0 430 aa19.45■□□□□ 0.7
UPF1-212ENST00000601689 PIP4P1Q86T03 277 aa19.45■□□□□ 0.7
UPF1-212ENST00000601689 OR13H1Q8NG92 308 aa19.45■□□□□ 0.7
UPF1-212ENST00000601689 VOPP1Q96AW1 172 aa19.45■□□□□ 0.7
UPF1-212ENST00000601689 BMFQ96LC9 184 aa19.45■□□□□ 0.7
UPF1-212ENST00000601689 AGAP3Q96P47 875 aa19.45■□□□□ 0.7
UPF1-212ENST00000601689 HEMGNQ9BXL5 484 aa19.45■□□□□ 0.7
UPF1-212ENST00000601689 OSBPL8Q9BZF1 889 aa19.45■□□□□ 0.7
UPF1-212ENST00000601689 RPL26L1Q9UNX3 145 aaKnown RBP19.45■□□□□ 0.7
UPF1-212ENST00000601689 TDRD6O60522 2096 aaKnown RBP19.44■□□□□ 0.7
UPF1-212ENST00000601689 NEMP2A6NFY4 417 aa19.44■□□□□ 0.7
UPF1-212ENST00000601689 H7C0C1 242 aa19.44■□□□□ 0.7
UPF1-212ENST00000601689 STK10O94804 968 aaKnown RBP19.44■□□□□ 0.7
UPF1-212ENST00000601689 ATP5OP48047 213 aa19.44■□□□□ 0.7
UPF1-212ENST00000601689 HNRNPKP61978 463 aaKnown RBP eCLIP19.44■□□□□ 0.7
UPF1-212ENST00000601689 TRAF2Q12933 501 aa19.44■□□□□ 0.7
UPF1-212ENST00000601689 XRCC4Q13426 336 aa19.44■□□□□ 0.7
UPF1-212ENST00000601689 PDE1CQ14123 709 aaPredicted RBP19.44■□□□□ 0.7
UPF1-212ENST00000601689 TRIP6Q15654 476 aaKnown RBP19.44■□□□□ 0.7
UPF1-212ENST00000601689 TEX44Q53QW1 395 aa19.44■□□□□ 0.7
UPF1-212ENST00000601689 LIPIQ6XZB0 460 aa19.44■□□□□ 0.7
UPF1-212ENST00000601689 BBS12Q6ZW61 710 aa19.44■□□□□ 0.7
UPF1-212ENST00000601689 ZC3H18Q86VM9 953 aaKnown RBP19.44■□□□□ 0.7
UPF1-212ENST00000601689 PARGQ86W56 976 aa19.44■□□□□ 0.7
UPF1-212ENST00000601689 ZSWIM9Q86XI8 627 aa19.44■□□□□ 0.7
UPF1-212ENST00000601689 LRRC57Q8N9N7 239 aa19.44■□□□□ 0.7
UPF1-212ENST00000601689 TTC13Q8NBP0 860 aa19.44■□□□□ 0.7
UPF1-212ENST00000601689 BTN2A2Q8WVV5 523 aa19.44■□□□□ 0.7
UPF1-212ENST00000601689 CENPTQ96BT3 561 aa19.44■□□□□ 0.7
UPF1-212ENST00000601689 SCRN2Q96FV2 425 aa19.44■□□□□ 0.7
UPF1-212ENST00000601689 PCDH9Q9HC56 1237 aa19.44■□□□□ 0.7
UPF1-212ENST00000601689 B4GALT6Q9UBX8 382 aa19.44■□□□□ 0.7
UPF1-212ENST00000601689 CNOT1A5YKK6 2376 aaKnown RBP19.44■□□□□ 0.7
UPF1-212ENST00000601689 DCHS1Q96JQ0 3298 aa19.43■□□□□ 0.7
UPF1-212ENST00000601689 LRRK1Q38SD2 2015 aa19.43■□□□□ 0.7
UPF1-212ENST00000601689 POM121BA6NF01 834 aa19.43■□□□□ 0.7
UPF1-212ENST00000601689 PSMD11O00231 422 aa19.43■□□□□ 0.7
UPF1-212ENST00000601689 RAD51BO15315 384 aa19.43■□□□□ 0.7
UPF1-212ENST00000601689 SPINT1O43278 529 aa19.43■□□□□ 0.7
UPF1-212ENST00000601689 PRKCGP05129 697 aa19.43■□□□□ 0.7
UPF1-212ENST00000601689 ALPPL2P10696 532 aa19.43■□□□□ 0.7
UPF1-212ENST00000601689 PTPN7P35236 360 aa19.43■□□□□ 0.7
UPF1-212ENST00000601689 MARCKSL1P49006 195 aa19.43■□□□□ 0.7
UPF1-212ENST00000601689 PEX5P50542 639 aa19.43■□□□□ 0.7
UPF1-212ENST00000601689 IL9RQ01113 521 aa19.43■□□□□ 0.7
UPF1-212ENST00000601689 AGERQ15109 404 aa19.43■□□□□ 0.7
UPF1-212ENST00000601689 PRAMEF14Q5SWL7 426 aa19.43■□□□□ 0.7
UPF1-212ENST00000601689 DBX2Q6ZNG2 339 aa19.43■□□□□ 0.7
UPF1-212ENST00000601689 SPATS2Q86XZ4 545 aaKnown RBP19.43■□□□□ 0.7
UPF1-212ENST00000601689 LRRN4Q8WUT4 740 aa19.43■□□□□ 0.7
UPF1-212ENST00000601689 KLF6Q99612 283 aaPredicted RBP19.43■□□□□ 0.7
UPF1-212ENST00000601689 TDRD1Q9BXT4 1180 aaKnown RBP19.43■□□□□ 0.7
UPF1-212ENST00000601689 KLHL8Q9P2G9 620 aaPredicted RBP19.43■□□□□ 0.7
UPF1-212ENST00000601689 TRIM10Q9UDY6 481 aa19.43■□□□□ 0.7
UPF1-212ENST00000601689 COQ6Q9Y2Z9 468 aa19.43■□□□□ 0.7
UPF1-212ENST00000601689 A8MX80 341 aa19.42■□□□□ 0.7
UPF1-212ENST00000601689 PDE2AO00408 941 aaPredicted RBP19.42■□□□□ 0.7
UPF1-212ENST00000601689 ZNF30P17039 623 aa19.42■□□□□ 0.7
UPF1-212ENST00000601689 KELP23276 732 aa19.42■□□□□ 0.7
UPF1-212ENST00000601689 EPHA8P29322 1005 aaPredicted RBP19.42■□□□□ 0.7
UPF1-212ENST00000601689 CD86P42081 329 aa19.42■□□□□ 0.7
UPF1-212ENST00000601689 BLKP51451 505 aa19.42■□□□□ 0.7
UPF1-212ENST00000601689 SIM1P81133 766 aaPredicted RBP19.42■□□□□ 0.7
UPF1-212ENST00000601689 MTM1Q13496 603 aa19.42■□□□□ 0.7
UPF1-212ENST00000601689 SEL1L2Q5TEA6 688 aa19.42■□□□□ 0.7
UPF1-212ENST00000601689 DENND2CQ68D51 928 aa19.42■□□□□ 0.7
UPF1-212ENST00000601689 PID1Q7Z2X4 250 aa19.42■□□□□ 0.7
UPF1-212ENST00000601689 TP53I13Q8NBR0 393 aaPredicted RBP19.42■□□□□ 0.7
UPF1-212ENST00000601689 LRRC45Q96CN5 670 aa19.42■□□□□ 0.7
UPF1-212ENST00000601689 SRPK1Q96SB4 655 aaKnown RBP19.42■□□□□ 0.7
UPF1-212ENST00000601689 SLC25A51Q9H1U9 297 aa19.42■□□□□ 0.7
UPF1-212ENST00000601689 EVA1BQ9NVM1 165 aa19.42■□□□□ 0.7
UPF1-212ENST00000601689 DNAJC28Q9NX36 388 aa19.42■□□□□ 0.7
UPF1-212ENST00000601689 SAE1Q9UBE0 346 aaPredicted RBP19.42■□□□□ 0.7
UPF1-212ENST00000601689 TRHDEQ9UKU6 1024 aa19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms