RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	LINC00523	Q86TU6	105 aa		11.78	□□□□□ -0.52
VRK3-223	ENST00000601341	METTL3	Q86U44	580 aa	Known RBP	11.78	□□□□□ -0.52
VRK3-223	ENST00000601341	LONP2	Q86WA8	852 aa		11.78	□□□□□ -0.52
VRK3-223	ENST00000601341	CRLF3	Q8IUI8	442 aa		11.78	□□□□□ -0.52
VRK3-223	ENST00000601341	NUDCD3	Q8IVD9	361 aa		11.78	□□□□□ -0.52
VRK3-223	ENST00000601341	PGBD5	Q8N414	524 aa		11.78	□□□□□ -0.52
VRK3-223	ENST00000601341	SPATA22	Q8NHS9	363 aa		11.78	□□□□□ -0.52
VRK3-223	ENST00000601341	SUSD6	Q92537	303 aa		11.78	□□□□□ -0.52
VRK3-223	ENST00000601341	ISL2	Q96A47	359 aa		11.78	□□□□□ -0.52
VRK3-223	ENST00000601341	ASIC4	Q96FT7	647 aa		11.78	□□□□□ -0.52
VRK3-223	ENST00000601341	EBF3	Q9H4W6	596 aa		11.78	□□□□□ -0.52
VRK3-223	ENST00000601341	UBP1	Q9NZI7	540 aa		11.78	□□□□□ -0.52
VRK3-223	ENST00000601341	DCTN4	Q9UJW0	460 aa		11.78	□□□□□ -0.52
VRK3-223	ENST00000601341	INTS6	Q9UL03	887 aa	Known RBP	11.78	□□□□□ -0.52
VRK3-223	ENST00000601341	NUP210	Q8TEM1	1887 aa	Predicted RBP	11.78	□□□□□ -0.52
VRK3-223	ENST00000601341	HMX2	A2RU54	273 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	ECI2	O75521	394 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	PIAS1	O75925	651 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	TMCC1	O94876	653 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	CBX6	O95503	412 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	CD160	O95971	181 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	MT-CYB	P00156	380 aa	Predicted RBP	11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	MYL2	P10916	166 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	ARSA	P15289	507 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	GNAZ	P19086	355 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	GRK2	P25098	689 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	GRIA1	P42261	906 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	TMPRSS15	P98073	1019 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	SULT2A1	Q06520	285 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	CYTH1	Q15438	398 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	SPANXN3	Q5MJ09	141 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	ASTL	Q6HA08	431 aa	Predicted RBP	11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	CDHR3	Q6ZTQ4	885 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	MTSS1L	Q765P7	747 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	NDUFAF2	Q8N183	169 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	NAT16	Q8N8M0	369 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	ARRDC2	Q8TBH0	407 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	THOC1	Q96FV9	657 aa	Known RBP	11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	ZFYVE19	Q96K21	471 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	SEMA3C	Q99985	751 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	MGME1	Q9BQP7	344 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	FBXO10	Q9UK96	956 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	L3MBTL1	Q9Y468	752 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	ACTL7A	Q9Y615	435 aa		11.77	□□□□□ -0.52
VRK3-223	ENST00000601341	CHD5	Q8TDI0	1954 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	SHROOM3	Q8TF72	1996 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	REV3L	O60673	3130 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	MAGEB16	A2A368	324 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	CAPN14	A8MX76	684 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341		H3BQ06	376 aa	Predicted RBP	11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	LIN7A	O14910	233 aa	Predicted RBP	11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	MUSK	O15146	869 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	PEX11A	O75192	247 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	POLB	P06746	335 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	SERPINB3	P29508	390 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	CD86	P42081	329 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	SERPINH1	P50454	418 aa	Known RBP	11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	DSC2	Q02487	901 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	NSUN2	Q08J23	767 aa	Known RBP eCLIP	11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	BST1	Q10588	318 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	OVGP1	Q12889	678 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	MTM1	Q13496	603 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	ARMC3	Q5W041	872 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	TRMT10B	Q6PF06	316 aa	Known RBP	11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	PARM1	Q6UWI2	310 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	SUPV3L1	Q8IYB8	786 aa	Known RBP eCLIP	11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	AHI1	Q8N157	1196 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	CPA6	Q8N4T0	437 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	DNAAF3	Q8N9W5	541 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	ST13P5	Q8NFI4	369 aa	Predicted RBP	11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	IPMK	Q8NFU5	416 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	FGF14	Q92915	247 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	CPNE1	Q99829	537 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	KXD1	Q9BQD3	176 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	FSD1L	Q9BXM9	530 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	C1orf21	Q9H246	121 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	EPS15L1	Q9UBC2	864 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	LRRC42	Q9Y546	428 aa		11.77	□□□□□ -0.53
VRK3-223	ENST00000601341	GYG2	O15488	501 aa		11.76	□□□□□ -0.53
VRK3-223	ENST00000601341	GSC2	O15499	205 aa		11.76	□□□□□ -0.53
VRK3-223	ENST00000601341	MAGEC1	O60732	1142 aa		11.76	□□□□□ -0.53
VRK3-223	ENST00000601341	PMPCB	O75439	489 aa		11.76	□□□□□ -0.53
VRK3-223	ENST00000601341	MT-CO1	P00395	513 aa		11.76	□□□□□ -0.53
VRK3-223	ENST00000601341	SERPINA6	P08185	405 aa		11.76	□□□□□ -0.53
VRK3-223	ENST00000601341	SERPINF2	P08697	491 aa		11.76	□□□□□ -0.53
VRK3-223	ENST00000601341	TPBGL	P0DKB5	382 aa		11.76	□□□□□ -0.53
VRK3-223	ENST00000601341	HADHA	P40939	763 aa		11.76	□□□□□ -0.53
VRK3-223	ENST00000601341	DGKG	P49619	791 aa		11.76	□□□□□ -0.53
VRK3-223	ENST00000601341	WNT3A	P56704	352 aa		11.76	□□□□□ -0.53
VRK3-223	ENST00000601341	RHOA	P61586	193 aa		11.76	□□□□□ -0.53
VRK3-223	ENST00000601341	CDH17	Q12864	832 aa		11.76	□□□□□ -0.53
VRK3-223	ENST00000601341	STX3	Q13277	289 aa		11.76	□□□□□ -0.53
VRK3-223	ENST00000601341	CRYM	Q14894	314 aa		11.76	□□□□□ -0.53
VRK3-223	ENST00000601341	SLC14A2	Q15849	920 aa		11.76	□□□□□ -0.53
VRK3-223	ENST00000601341	FUT11	Q495W5	492 aa		11.76	□□□□□ -0.53
VRK3-223	ENST00000601341	GRTP1	Q5TC63	336 aa		11.76	□□□□□ -0.53
VRK3-223	ENST00000601341	GPR153	Q6NV75	609 aa		11.76	□□□□□ -0.53
VRK3-223	ENST00000601341	KDELC1	Q6UW63	502 aa		11.76	□□□□□ -0.53
VRK3-223	ENST00000601341	PACS1	Q6VY07	963 aa		11.76	□□□□□ -0.53
VRK3-223	ENST00000601341	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	11.76	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms