RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 RALGDSQ12967 914 aa16.94■□□□□ 0.3
TRIM28-215ENST00000601150 SUZ12Q15022 739 aaKnown RBP16.94■□□□□ 0.3
TRIM28-215ENST00000601150 PRAMEF14Q5SWL7 426 aa16.94■□□□□ 0.3
TRIM28-215ENST00000601150 CCDC181Q5TID7 509 aa16.94■□□□□ 0.3
TRIM28-215ENST00000601150 PSAPL1Q6NUJ1 521 aa16.94■□□□□ 0.3
TRIM28-215ENST00000601150 Q6ZSR6 202 aa16.94■□□□□ 0.3
TRIM28-215ENST00000601150 PTAR1Q7Z6K3 402 aaPredicted RBP16.94■□□□□ 0.3
TRIM28-215ENST00000601150 DCP2Q8IU60 420 aaKnown RBP16.94■□□□□ 0.3
TRIM28-215ENST00000601150 NAXDQ8IW45 347 aa16.94■□□□□ 0.3
TRIM28-215ENST00000601150 CNTD1Q8N815 330 aa16.94■□□□□ 0.3
TRIM28-215ENST00000601150 DEFB124Q8NES8 71 aa16.94■□□□□ 0.3
TRIM28-215ENST00000601150 ALG3Q92685 438 aa16.94■□□□□ 0.3
TRIM28-215ENST00000601150 CENPTQ96BT3 561 aa16.94■□□□□ 0.3
TRIM28-215ENST00000601150 HAUS1Q96CS2 278 aa16.94■□□□□ 0.3
TRIM28-215ENST00000601150 SEPT10Q9P0V9 454 aa16.94■□□□□ 0.3
TRIM28-215ENST00000601150 COQ6Q9Y2Z9 468 aa16.94■□□□□ 0.3
TRIM28-215ENST00000601150 DCHS1Q96JQ0 3298 aa16.94■□□□□ 0.3
TRIM28-215ENST00000601150 CABIN1Q9Y6J0 2220 aa16.93■□□□□ 0.3
TRIM28-215ENST00000601150 HACD1B0YJ81 288 aa16.93■□□□□ 0.3
TRIM28-215ENST00000601150 APOC4-APOC2K7ER74 178 aa16.93■□□□□ 0.3
TRIM28-215ENST00000601150 MTSS1O43312 755 aa16.93■□□□□ 0.3
TRIM28-215ENST00000601150 SH3BP5O60239 455 aa16.93■□□□□ 0.3
TRIM28-215ENST00000601150 LZTS3O60299 673 aaPredicted RBP16.93■□□□□ 0.3
TRIM28-215ENST00000601150 PCDHGA12O60330 932 aa16.93■□□□□ 0.3
TRIM28-215ENST00000601150 FZD6O60353 706 aa16.93■□□□□ 0.3
TRIM28-215ENST00000601150 APOC2P02655 101 aa16.93■□□□□ 0.3
TRIM28-215ENST00000601150 ELFN1P0C7U0 828 aa16.93■□□□□ 0.3
TRIM28-215ENST00000601150 CEACAM1P13688 526 aa16.93■□□□□ 0.3
TRIM28-215ENST00000601150 VIPR1P32241 457 aa16.93■□□□□ 0.3
TRIM28-215ENST00000601150 RABIFP47224 123 aa16.93■□□□□ 0.3
TRIM28-215ENST00000601150 IL9RQ01113 521 aa16.93■□□□□ 0.3
TRIM28-215ENST00000601150 IHHQ14623 411 aa16.93■□□□□ 0.3
TRIM28-215ENST00000601150 AGERQ15109 404 aa16.93■□□□□ 0.3
TRIM28-215ENST00000601150 LIPIQ6XZB0 460 aa16.93■□□□□ 0.3
TRIM28-215ENST00000601150 USP45Q70EL2 814 aa16.93■□□□□ 0.3
TRIM28-215ENST00000601150 B4GALNT4Q76KP1 1039 aa16.93■□□□□ 0.3
TRIM28-215ENST00000601150 NDUFAF2Q8N183 169 aa16.93■□□□□ 0.3
TRIM28-215ENST00000601150 TP53I13Q8NBR0 393 aaPredicted RBP16.93■□□□□ 0.3
TRIM28-215ENST00000601150 SETD7Q8WTS6 366 aaKnown RBP16.93■□□□□ 0.3
TRIM28-215ENST00000601150 CEP41Q9BYV8 373 aa16.93■□□□□ 0.3
TRIM28-215ENST00000601150 B4GALT6Q9UBX8 382 aa16.93■□□□□ 0.3
TRIM28-215ENST00000601150 PACSIN2Q9UNF0 486 aaPredicted RBP16.93■□□□□ 0.3
TRIM28-215ENST00000601150 CNOT1A5YKK6 2376 aaKnown RBP16.93■□□□□ 0.3
TRIM28-215ENST00000601150 TDRD6O60522 2096 aaKnown RBP16.92■□□□□ 0.3
TRIM28-215ENST00000601150 A8MX80 341 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 FLRT2O43155 660 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 TJP3O95049 919 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 PDHA1P08559 390 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 PYGMP11217 842 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 CYP2A6P11509 494 aaPredicted RBP16.92■□□□□ 0.3
TRIM28-215ENST00000601150 IGFALSP35858 605 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 CD86P42081 329 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 RXRGP48443 463 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 PFN3P60673 137 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 XRCC4Q13426 336 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 LRRC14Q15048 493 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 IRF4Q15306 451 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 SHBQ15464 509 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 TEX44Q53QW1 395 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 DBX2Q6ZNG2 339 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 ZNF662Q6ZS27 426 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 ZC3H18Q86VM9 953 aaKnown RBP16.92■□□□□ 0.3
TRIM28-215ENST00000601150 UBE2Q2Q8WVN8 375 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 PIH1D2Q8WWB5 315 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 SCRN2Q96FV2 425 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 HES6Q96HZ4 224 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 CAMK1GQ96NX5 476 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 AGAP3Q96P47 875 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 QKIQ96PU8 341 aaKnown RBP eCLIP16.92■□□□□ 0.3
TRIM28-215ENST00000601150 HERPUD2Q9BSE4 406 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 TDRD1Q9BXT4 1180 aaKnown RBP16.92■□□□□ 0.3
TRIM28-215ENST00000601150 MBNL1Q9NR56 388 aaKnown RBP16.92■□□□□ 0.3
TRIM28-215ENST00000601150 GPR27Q9NS67 375 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 CHKBQ9Y259 395 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 PPIL1Q9Y3C6 166 aa16.92■□□□□ 0.3
TRIM28-215ENST00000601150 PCNX2A6NKB5 2137 aa16.91■□□□□ 0.3
TRIM28-215ENST00000601150 TOR1BO14657 336 aa16.91■□□□□ 0.3
TRIM28-215ENST00000601150 GIPC1O14908 333 aa16.91■□□□□ 0.3
TRIM28-215ENST00000601150 DDX3YO15523 660 aaKnown RBP16.91■□□□□ 0.3
TRIM28-215ENST00000601150 MMP2P08253 660 aa16.91■□□□□ 0.3
TRIM28-215ENST00000601150 PTPN3P26045 913 aa16.91■□□□□ 0.3
TRIM28-215ENST00000601150 EPHB1P54762 984 aa16.91■□□□□ 0.3
TRIM28-215ENST00000601150 RPL26P61254 145 aaKnown RBP16.91■□□□□ 0.3
TRIM28-215ENST00000601150 SKOR1P84550 965 aa16.91■□□□□ 0.3
TRIM28-215ENST00000601150 NOMO1Q15155 1222 aa16.91■□□□□ 0.3
TRIM28-215ENST00000601150 WSCD2Q2TBF2 565 aa16.91■□□□□ 0.3
TRIM28-215ENST00000601150 INAVAQ3KP66 663 aa16.91■□□□□ 0.3
TRIM28-215ENST00000601150 AADACL2Q6P093 401 aa16.91■□□□□ 0.3
TRIM28-215ENST00000601150 SLC22A18ASQ8N1D0 253 aa16.91■□□□□ 0.3
TRIM28-215ENST00000601150 IFT43Q96FT9 208 aa16.91■□□□□ 0.3
TRIM28-215ENST00000601150 IMP4Q96G21 291 aaKnown RBP16.91■□□□□ 0.3
TRIM28-215ENST00000601150 MCCC1Q96RQ3 725 aaPredicted RBP16.91■□□□□ 0.3
TRIM28-215ENST00000601150 SLC25A51Q9H1U9 297 aa16.91■□□□□ 0.3
TRIM28-215ENST00000601150 PCDH9Q9HC56 1237 aa16.91■□□□□ 0.3
TRIM28-215ENST00000601150 RPL26L1Q9UNX3 145 aaKnown RBP16.91■□□□□ 0.3
TRIM28-215ENST00000601150 NPIPB15A6NHN6 443 aaPredicted RBP16.9■□□□□ 0.3
TRIM28-215ENST00000601150 H7C0C1 242 aa16.9■□□□□ 0.3
TRIM28-215ENST00000601150 RECQL5O94762 991 aaPredicted RBP16.9■□□□□ 0.3
TRIM28-215ENST00000601150 HEXIM1O94992 359 aaKnown RBP16.9■□□□□ 0.3
TRIM28-215ENST00000601150 PTMAP06454 111 aaKnown RBP16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms