RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 CCDC15Q0P6D6 951 aa20.1■□□□□ 0.81
SHKBP1-222ENST00000600320 TMEM52BQ4KMG9 183 aa20.1■□□□□ 0.81
SHKBP1-222ENST00000600320 TSPAN33Q86UF1 283 aa20.1■□□□□ 0.81
SHKBP1-222ENST00000600320 ZBTB44Q8NCP5 570 aa20.1■□□□□ 0.81
SHKBP1-222ENST00000600320 CCHCR1Q8TD31 782 aa20.1■□□□□ 0.81
SHKBP1-222ENST00000600320 GAB3Q8WWW8 586 aa20.1■□□□□ 0.81
SHKBP1-222ENST00000600320 LRRC45Q96CN5 670 aa20.1■□□□□ 0.81
SHKBP1-222ENST00000600320 SCRN2Q96FV2 425 aa20.1■□□□□ 0.81
SHKBP1-222ENST00000600320 GPR174Q9BXC1 333 aa20.1■□□□□ 0.81
SHKBP1-222ENST00000600320 TRIM31Q9BZY9 425 aa20.1■□□□□ 0.81
SHKBP1-222ENST00000600320 EIF2B3Q9NR50 452 aaKnown RBP20.1■□□□□ 0.81
SHKBP1-222ENST00000600320 PIH1D1Q9NWS0 290 aaKnown RBP20.1■□□□□ 0.81
SHKBP1-222ENST00000600320 SPO11Q9Y5K1 396 aa20.1■□□□□ 0.81
SHKBP1-222ENST00000600320 CAPN8A6NHC0 703 aa20.09■□□□□ 0.81
SHKBP1-222ENST00000600320 ERI2A8K979 691 aaKnown RBP20.09■□□□□ 0.81
SHKBP1-222ENST00000600320 TPSB2P20231 275 aa20.09■□□□□ 0.81
SHKBP1-222ENST00000600320 VIPR1P32241 457 aa20.09■□□□□ 0.81
SHKBP1-222ENST00000600320 PPP2CBP62714 309 aa20.09■□□□□ 0.81
SHKBP1-222ENST00000600320 PPP2CAP67775 309 aa20.09■□□□□ 0.81
SHKBP1-222ENST00000600320 TCF15Q12870 199 aa20.09■□□□□ 0.81
SHKBP1-222ENST00000600320 MSLNQ13421 630 aaPredicted RBP20.09■□□□□ 0.81
SHKBP1-222ENST00000600320 TPSAB1Q15661 275 aa20.09■□□□□ 0.81
SHKBP1-222ENST00000600320 CDKN3Q16667 212 aa20.09■□□□□ 0.81
SHKBP1-222ENST00000600320 RNASEH2BQ5TBB1 312 aaKnown RBP20.09■□□□□ 0.81
SHKBP1-222ENST00000600320 C8orf74Q6P047 294 aa20.09■□□□□ 0.81
SHKBP1-222ENST00000600320 ERAP2Q6P179 960 aa20.09■□□□□ 0.81
SHKBP1-222ENST00000600320 USP45Q70EL2 814 aa20.09■□□□□ 0.81
SHKBP1-222ENST00000600320 ZNF534Q76KX8 674 aa20.09■□□□□ 0.81
SHKBP1-222ENST00000600320 DPPA4Q7L190 304 aa20.09■□□□□ 0.81
SHKBP1-222ENST00000600320 MAATS1Q7Z4T9 603 aa20.09■□□□□ 0.81
SHKBP1-222ENST00000600320 DEFB119Q8N690 84 aa20.09■□□□□ 0.81
SHKBP1-222ENST00000600320 NAT8LQ8N9F0 302 aa20.09■□□□□ 0.81
SHKBP1-222ENST00000600320 OR52K1Q8NGK4 314 aa20.09■□□□□ 0.81
SHKBP1-222ENST00000600320 OR2T34Q8NGX1 318 aa20.09■□□□□ 0.81
SHKBP1-222ENST00000600320 SPACA7Q96KW9 195 aa20.09■□□□□ 0.81
SHKBP1-222ENST00000600320 C6orf106Q9H6K1 298 aaPredicted RBP20.09■□□□□ 0.81
SHKBP1-222ENST00000600320 ZFR2Q9UPR6 939 aaKnown RBP20.09■□□□□ 0.81
SHKBP1-222ENST00000600320 SNX24Q9Y343 169 aa20.09■□□□□ 0.81
SHKBP1-222ENST00000600320 EFCAB8A8MWE9 144 aa20.08■□□□□ 0.81
SHKBP1-222ENST00000600320 H0Y858 1186 aa20.08■□□□□ 0.81
SHKBP1-222ENST00000600320 RNGTTO60942 597 aaKnown RBP20.08■□□□□ 0.81
SHKBP1-222ENST00000600320 LILRB5O75023 590 aa20.08■□□□□ 0.81
SHKBP1-222ENST00000600320 RPP40O75818 363 aaKnown RBP20.08■□□□□ 0.81
SHKBP1-222ENST00000600320 FGF1P05230 155 aa20.08■□□□□ 0.81
SHKBP1-222ENST00000600320 RPL21P46778 160 aaKnown RBP20.08■□□□□ 0.81
SHKBP1-222ENST00000600320 SLC7A5Q01650 507 aa20.08■□□□□ 0.81
SHKBP1-222ENST00000600320 ELP6Q0PNE2 266 aa20.08■□□□□ 0.81
SHKBP1-222ENST00000600320 IZUMO3Q5VZ72 239 aa20.08■□□□□ 0.81
SHKBP1-222ENST00000600320 SEL1L3Q68CR1 1132 aa20.08■□□□□ 0.81
SHKBP1-222ENST00000600320 NAPEPLDQ6IQ20 393 aa20.08■□□□□ 0.81
SHKBP1-222ENST00000600320 CCDC70Q6NSX1 233 aa20.08■□□□□ 0.81
SHKBP1-222ENST00000600320 CRTC1Q6UUV9 634 aa20.08■□□□□ 0.81
SHKBP1-222ENST00000600320 FAM122AQ96E09 287 aa20.08■□□□□ 0.81
SHKBP1-222ENST00000600320 LYSMD1Q96S90 227 aa20.08■□□□□ 0.81
SHKBP1-222ENST00000600320 HINFPQ9BQA5 517 aa20.08■□□□□ 0.81
SHKBP1-222ENST00000600320 ERP44Q9BS26 406 aa20.08■□□□□ 0.81
SHKBP1-222ENST00000600320 WRAP53Q9BUR4 548 aaKnown RBP20.08■□□□□ 0.81
SHKBP1-222ENST00000600320 DPH5Q9H2P9 285 aa20.08■□□□□ 0.81
SHKBP1-222ENST00000600320 ARNT2Q9HBZ2 717 aa20.08■□□□□ 0.81
SHKBP1-222ENST00000600320 PREBQ9HCU5 417 aa20.08■□□□□ 0.81
SHKBP1-222ENST00000600320 CASS4Q9NQ75 786 aa20.08■□□□□ 0.81
SHKBP1-222ENST00000600320 TPX2Q9ULW0 747 aaKnown RBP20.08■□□□□ 0.81
SHKBP1-222ENST00000600320 TBC1D3DA0A087WVF3 549 aa20.07■□□□□ 0.8
SHKBP1-222ENST00000600320 TBC1D3IA0A087WXS9 549 aa20.07■□□□□ 0.8
SHKBP1-222ENST00000600320 TBC1D3EA0A087X179 549 aa20.07■□□□□ 0.8
SHKBP1-222ENST00000600320 TBC1D3KA0A087X1G2 549 aa20.07■□□□□ 0.8
SHKBP1-222ENST00000600320 A0A1W2PQU0 124 aa20.07■□□□□ 0.8
SHKBP1-222ENST00000600320 TBC1D3FA6NER0 549 aaPredicted RBP20.07■□□□□ 0.8
SHKBP1-222ENST00000600320 TBC1D3LB9A6J9 549 aa20.07■□□□□ 0.8
SHKBP1-222ENST00000600320 NEMP1O14524 444 aa20.07■□□□□ 0.8
SHKBP1-222ENST00000600320 TSPAN6O43657 245 aa20.07■□□□□ 0.8
SHKBP1-222ENST00000600320 MMP20O60882 483 aa20.07■□□□□ 0.8
SHKBP1-222ENST00000600320 HEXIM1O94992 359 aaKnown RBP20.07■□□□□ 0.8
SHKBP1-222ENST00000600320 PCDH8O95206 1070 aa20.07■□□□□ 0.8
SHKBP1-222ENST00000600320 TBC1D3HP0C7X1 549 aa20.07■□□□□ 0.8
SHKBP1-222ENST00000600320 CYP2A6P11509 494 aaPredicted RBP20.07■□□□□ 0.8
SHKBP1-222ENST00000600320 TPH1P17752 444 aa20.07■□□□□ 0.8
SHKBP1-222ENST00000600320 CNGA3Q16281 694 aa20.07■□□□□ 0.8
SHKBP1-222ENST00000600320 KIAA0895LQ68EN5 471 aa20.07■□□□□ 0.8
SHKBP1-222ENST00000600320 DUPD1Q68J44 220 aa20.07■□□□□ 0.8
SHKBP1-222ENST00000600320 TBC1D3GQ6DHY5 549 aa20.07■□□□□ 0.8
SHKBP1-222ENST00000600320 TBC1D3CQ6IPX1 549 aa20.07■□□□□ 0.8
SHKBP1-222ENST00000600320 SLC36A4Q6YBV0 504 aa20.07■□□□□ 0.8
SHKBP1-222ENST00000600320 TBC1D3Q8IZP1 549 aaPredicted RBP20.07■□□□□ 0.8
SHKBP1-222ENST00000600320 NDUFAF2Q8N183 169 aa20.07■□□□□ 0.8
SHKBP1-222ENST00000600320 KDM4CQ9H3R0 1056 aa20.07■□□□□ 0.8
SHKBP1-222ENST00000600320 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa20.06■□□□□ 0.8
SHKBP1-222ENST00000600320 LRRC72A6NJI9 287 aa20.06■□□□□ 0.8
SHKBP1-222ENST00000600320 AURKAO14965 403 aa20.06■□□□□ 0.8
SHKBP1-222ENST00000600320 TP73O15350 636 aa20.06■□□□□ 0.8
SHKBP1-222ENST00000600320 NDUFS2O75306 463 aa20.06■□□□□ 0.8
SHKBP1-222ENST00000600320 GM2AP17900 193 aa20.06■□□□□ 0.8
SHKBP1-222ENST00000600320 TNNT3P45378 269 aaPredicted RBP20.06■□□□□ 0.8
SHKBP1-222ENST00000600320 RPL6Q02878 288 aaKnown RBP20.06■□□□□ 0.8
SHKBP1-222ENST00000600320 FGL2Q14314 439 aa20.06■□□□□ 0.8
SHKBP1-222ENST00000600320 TRADDQ15628 312 aa20.06■□□□□ 0.8
SHKBP1-222ENST00000600320 LRRC66Q68CR7 880 aa20.06■□□□□ 0.8
SHKBP1-222ENST00000600320 LIPIQ6XZB0 460 aa20.06■□□□□ 0.8
SHKBP1-222ENST00000600320 PPP1R21Q6ZMI0 780 aa20.06■□□□□ 0.8
SHKBP1-222ENST00000600320 LYSMD3Q7Z3D4 306 aa20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms