RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 PRAMEF26H0Y7S4 382 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 VILLO15195 856 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 KCNN4O15554 427 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 CEP104O60308 925 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 C6P13671 934 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 CD38P28907 300 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 CTSKP43235 329 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 GRIA4P48058 902 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 AFF3P51826 1226 aaKnown RBP14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 POLR2LP62875 67 aaKnown RBP14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 CNGA3Q16281 694 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 CDKN3Q16667 212 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 QPCTQ16769 361 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 WSCD2Q2TBF2 565 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 AASDHQ4L235 1098 aaPredicted RBP14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 SETMARQ53H47 684 aaPredicted RBP14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 ANKRD20A2Q5SQ80 823 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 TPRG1LQ5T0D9 272 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 SEL1L2Q5TEA6 688 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 ANKRD20A1Q5TYW2 823 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 ANKRD20A3Q5VUR7 823 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 ERAP2Q6P179 960 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 CRTC1Q6UUV9 634 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 PRUNE1Q86TP1 453 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 CDKL3Q8IVW4 592 aaPredicted RBP14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 C12orf50Q8NA57 414 aaPredicted RBP14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 TP53I13Q8NBR0 393 aaPredicted RBP14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 LPCAT1Q8NF37 534 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 CCDC110Q8TBZ0 833 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 CXorf40AQ8TE69 158 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 ASB12Q8WXK4 309 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 SCRN2Q96FV2 425 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 MS4A14Q96JA4 679 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 LENG8Q96PV6 779 aaPredicted RBP14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 FCRL5Q96RD9 977 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 WDR24Q96S15 920 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 TMEM121Q9BTD3 319 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 EDEM2Q9BV94 578 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 PCDH9Q9HC56 1237 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 SMARCAL1Q9NZC9 954 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 KLHL8Q9P2G9 620 aaPredicted RBP14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 DMTF1Q9Y222 760 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 JRKLQ9Y4A0 524 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 SPAG17Q6Q759 2223 aa14.27□□□□□ -0.13
SHKBP1-217ENST00000598558 A0A0J9YYE9 177 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 GOLGA6L9A6NEM1 432 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 C4orf47A7E2U8 309 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 PRR5-ARHGAP8B1AHC4 643 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 MTSS1O43312 755 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 LIASO43766 372 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 PMPCBO75439 489 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 TM7SF2O76062 418 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 HEXIM1O94992 359 aaKnown RBP14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 TRBC1P01850 177 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 HNRNPA2B1P22626 353 aaKnown RBP14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 VIPR1P32241 457 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 IGFALSP35858 605 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 ELP6Q0PNE2 266 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 SGCGQ13326 291 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 OLIG2Q13516 323 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 SNX1Q13596 522 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 GALNT3Q14435 633 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 OASLQ15646 514 aaKnown RBP14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 PCSK7Q16549 785 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 STPG1Q5TH74 334 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 NYAP1Q6ZVC0 841 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 HSD11B1LQ7Z5J1 315 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 ABI3BPQ7Z7G0 1075 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 PAF1Q8N7H5 531 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 FAM71DQ8N9W8 422 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 MFSD2AQ8NA29 543 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 TTC13Q8NBP0 860 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 OR13H1Q8NG92 308 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 COG1Q8WTW3 980 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 EID2BQ96D98 161 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 MRGPRX2Q96LB1 330 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 COQ10AQ96MF6 247 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 MLPHQ9BV36 600 aaPredicted RBP14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 GTPBP2Q9BX10 602 aaKnown RBP14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 TPX2Q9ULW0 747 aaKnown RBP14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 FAM186AA6NE01 2351 aa14.26□□□□□ -0.13
SHKBP1-217ENST00000598558 SHROOM3Q8TF72 1996 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 PTPRZ1P23471 2315 aaPredicted RBP14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 A0A1W2PQ67 120 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 C5orf60A6NFR6 353 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 TLR4O00206 839 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 TM4SF5O14894 197 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 RECQL5O94762 991 aaPredicted RBP14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 METTL18O95568 372 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 FGGP02679 453 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 PIRTP0C851 137 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 AKT2P31751 481 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 NUDT1P36639 197 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 CHRNA4P43681 627 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 WNT3AP56704 352 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 NXPH1P58417 271 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 PTSQ03393 145 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 CDK18Q07002 472 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 STAT4Q14765 748 aa14.25□□□□□ -0.13
SHKBP1-217ENST00000598558 SHBQ15464 509 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms