RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 CCDC14Q49A88 953 aa16.6■□□□□ 0.25
SHKBP1-215ENST00000597649 COLEC12Q5KU26 742 aa16.6■□□□□ 0.25
SHKBP1-215ENST00000597649 ARCQ7LC44 396 aa16.6■□□□□ 0.25
SHKBP1-215ENST00000597649 PHLDB2Q86SQ0 1253 aa16.6■□□□□ 0.25
SHKBP1-215ENST00000597649 NOP9Q86U38 636 aaKnown RBP16.6■□□□□ 0.25
SHKBP1-215ENST00000597649 ZFAND4Q86XD8 727 aa16.6■□□□□ 0.25
SHKBP1-215ENST00000597649 Q8N9G6 341 aaPredicted RBP16.6■□□□□ 0.25
SHKBP1-215ENST00000597649 GPR156Q8NFN8 814 aa16.6■□□□□ 0.25
SHKBP1-215ENST00000597649 ANP32BQ92688 251 aaKnown RBP16.6■□□□□ 0.25
SHKBP1-215ENST00000597649 FUBP1Q96AE4 644 aaKnown RBP16.6■□□□□ 0.25
SHKBP1-215ENST00000597649 APOOQ9BUR5 198 aa16.6■□□□□ 0.25
SHKBP1-215ENST00000597649 C1QTNF7Q9BXJ2 289 aa16.6■□□□□ 0.25
SHKBP1-215ENST00000597649 TTYH3Q9C0H2 523 aa16.6■□□□□ 0.25
SHKBP1-215ENST00000597649 FOXJ2Q9P0K8 574 aa16.6■□□□□ 0.25
SHKBP1-215ENST00000597649 DKK3Q9UBP4 350 aa16.6■□□□□ 0.25
SHKBP1-215ENST00000597649 LOXL2Q9Y4K0 774 aa16.6■□□□□ 0.25
SHKBP1-215ENST00000597649 OR1A2Q9Y585 309 aa16.6■□□□□ 0.25
SHKBP1-215ENST00000597649 PRAMEF33A0A0G2JMD5 474 aa16.59■□□□□ 0.25
SHKBP1-215ENST00000597649 TMEM110-MUSTN1A8MSY1 372 aa16.59■□□□□ 0.25
SHKBP1-215ENST00000597649 BUB1O43683 1085 aa16.59■□□□□ 0.25
SHKBP1-215ENST00000597649 PRAMEF10O60809 474 aa16.59■□□□□ 0.25
SHKBP1-215ENST00000597649 RAMP2O60895 175 aa16.59■□□□□ 0.25
SHKBP1-215ENST00000597649 RASGRP1O95267 797 aa16.59■□□□□ 0.25
SHKBP1-215ENST00000597649 GYPCP04921 128 aa16.59■□□□□ 0.25
SHKBP1-215ENST00000597649 JMJD7P0C870 316 aa16.59■□□□□ 0.25
SHKBP1-215ENST00000597649 LIPCP11150 499 aa16.59■□□□□ 0.25
SHKBP1-215ENST00000597649 CTSEP14091 401 aa16.59■□□□□ 0.25
SHKBP1-215ENST00000597649 GEMIN4P57678 1058 aaKnown RBP16.59■□□□□ 0.25
SHKBP1-215ENST00000597649 SRP54P61011 504 aaKnown RBP16.59■□□□□ 0.25
SHKBP1-215ENST00000597649 CDO1Q16878 200 aa16.59■□□□□ 0.25
SHKBP1-215ENST00000597649 OGFOD3Q6PK18 319 aa16.59■□□□□ 0.25
SHKBP1-215ENST00000597649 HTR3CQ8WXA8 447 aa16.59■□□□□ 0.25
SHKBP1-215ENST00000597649 RXFP2Q8WXD0 754 aa16.59■□□□□ 0.25
SHKBP1-215ENST00000597649 TMEM74Q96NL1 305 aa16.59■□□□□ 0.25
SHKBP1-215ENST00000597649 ARHGAP9Q9BRR9 750 aa16.59■□□□□ 0.25
SHKBP1-215ENST00000597649 RETREG1Q9H6L5 497 aa16.59■□□□□ 0.25
SHKBP1-215ENST00000597649 HPCAL4Q9UM19 191 aa16.59■□□□□ 0.25
SHKBP1-215ENST00000597649 MFHAS1Q9Y4C4 1052 aa16.59■□□□□ 0.25
SHKBP1-215ENST00000597649 PCDHGA4Q9Y5G9 962 aa16.59■□□□□ 0.25
SHKBP1-215ENST00000597649 UTP20O75691 2785 aaKnown RBP16.59■□□□□ 0.25
SHKBP1-215ENST00000597649 SPENQ96T58 3664 aaKnown RBP16.58■□□□□ 0.24
SHKBP1-215ENST00000597649 GOLGA6L6A8MZA4 724 aa16.58■□□□□ 0.24
SHKBP1-215ENST00000597649 C9orf172C9J069 976 aa16.58■□□□□ 0.24
SHKBP1-215ENST00000597649 MMEP08473 750 aa16.58■□□□□ 0.24
SHKBP1-215ENST00000597649 PLEKP08567 350 aaPredicted RBP16.58■□□□□ 0.24
SHKBP1-215ENST00000597649 NOMO3P69849 1222 aa16.58■□□□□ 0.24
SHKBP1-215ENST00000597649 NFATC4Q14934 902 aa16.58■□□□□ 0.24
SHKBP1-215ENST00000597649 CLCA4Q14CN2 919 aa16.58■□□□□ 0.24
SHKBP1-215ENST00000597649 NAA35Q5VZE5 725 aa16.58■□□□□ 0.24
SHKBP1-215ENST00000597649 ATG14Q6ZNE5 492 aa16.58■□□□□ 0.24
SHKBP1-215ENST00000597649 GKN2Q86XP6 184 aa16.58■□□□□ 0.24
SHKBP1-215ENST00000597649 DTX1Q86Y01 620 aa16.58■□□□□ 0.24
SHKBP1-215ENST00000597649 CCNJLQ8IV13 435 aa16.58■□□□□ 0.24
SHKBP1-215ENST00000597649 CCDC185Q8N715 623 aa16.58■□□□□ 0.24
SHKBP1-215ENST00000597649 JOSD2Q8TAC2 188 aa16.58■□□□□ 0.24
SHKBP1-215ENST00000597649 USP7Q93009 1102 aa16.58■□□□□ 0.24
SHKBP1-215ENST00000597649 GDAP1L1Q96MZ0 367 aa16.58■□□□□ 0.24
SHKBP1-215ENST00000597649 RBM15Q96T37 977 aaKnown RBP eCLIP16.58■□□□□ 0.24
SHKBP1-215ENST00000597649 SEMA3CQ99985 751 aa16.58■□□□□ 0.24
SHKBP1-215ENST00000597649 METTL5Q9NRN9 209 aaKnown RBP16.58■□□□□ 0.24
SHKBP1-215ENST00000597649 ZNHIT6Q9NWK9 470 aaKnown RBP16.58■□□□□ 0.24
SHKBP1-215ENST00000597649 APPL1Q9UKG1 709 aa16.58■□□□□ 0.24
SHKBP1-215ENST00000597649 SCN8AQ9UQD0 1980 aa16.58■□□□□ 0.24
SHKBP1-215ENST00000597649 AKR1B15C9JRZ8 316 aaPredicted RBP16.57■□□□□ 0.24
SHKBP1-215ENST00000597649 PIGNO95427 931 aa16.57■□□□□ 0.24
SHKBP1-215ENST00000597649 LSM8O95777 96 aaKnown RBP16.57■□□□□ 0.24
SHKBP1-215ENST00000597649 CDC25BP30305 580 aa16.57■□□□□ 0.24
SHKBP1-215ENST00000597649 CYTH1Q15438 398 aa16.57■□□□□ 0.24
SHKBP1-215ENST00000597649 MANEAQ5SRI9 462 aa16.57■□□□□ 0.24
SHKBP1-215ENST00000597649 ZNF677Q86XU0 584 aa16.57■□□□□ 0.24
SHKBP1-215ENST00000597649 CNGA4Q8IV77 575 aa16.57■□□□□ 0.24
SHKBP1-215ENST00000597649 PLA2G15Q8NCC3 412 aa16.57■□□□□ 0.24
SHKBP1-215ENST00000597649 OR6C4Q8NGE1 309 aa16.57■□□□□ 0.24
SHKBP1-215ENST00000597649 OR8K1Q8NGG5 319 aa16.57■□□□□ 0.24
SHKBP1-215ENST00000597649 OR1E3Q8WZA6 343 aa16.57■□□□□ 0.24
SHKBP1-215ENST00000597649 CENPIQ92674 756 aaPredicted RBP16.57■□□□□ 0.24
SHKBP1-215ENST00000597649 SYN2Q92777 582 aaPredicted RBP16.57■□□□□ 0.24
SHKBP1-215ENST00000597649 TBC1D31Q96DN5 1066 aa16.57■□□□□ 0.24
SHKBP1-215ENST00000597649 PDXPQ96GD0 296 aa16.57■□□□□ 0.24
SHKBP1-215ENST00000597649 SEMA6CQ9H3T2 930 aa16.57■□□□□ 0.24
SHKBP1-215ENST00000597649 PCDH12Q9NPG4 1184 aa16.57■□□□□ 0.24
SHKBP1-215ENST00000597649 AIPL1Q9NZN9 384 aa16.57■□□□□ 0.24
SHKBP1-215ENST00000597649 RNF215Q9Y6U7 377 aa16.57■□□□□ 0.24
SHKBP1-215ENST00000597649 USP9YO00507 2555 aaPredicted RBP16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 TMEM202A6NGA9 273 aa16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 C2CD4BA6NLJ0 364 aa16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 BUB1BO60566 1050 aaPredicted RBP16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 IGSF6O95976 241 aa16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 PRKCGP05129 697 aa16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 HTR1BP28222 390 aa16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 LIG3P49916 1009 aa16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 HDAC4P56524 1084 aa16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 RHOAP61586 193 aa16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 RAD51Q06609 339 aa16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 KLHL30Q0D2K2 578 aa16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 INO80DQ53TQ3 878 aaPredicted RBP16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 CERCAMQ5T4B2 595 aa16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 SPRED1Q7Z699 444 aa16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 ZSWIM9Q86XI8 627 aa16.56■□□□□ 0.24
SHKBP1-215ENST00000597649 SLITRK4Q8IW52 837 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms