RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	PRAMEF12	O95522	483 aa		15.51	■□□□□ 0.07
DDX39A-209	ENST00000589318	SNRPA	P09012	282 aa	Known RBP	15.51	■□□□□ 0.07
DDX39A-209	ENST00000589318	POU2F2	P09086	479 aa		15.51	■□□□□ 0.07
DDX39A-209	ENST00000589318	ATXN1L	P0C7T5	689 aa	Known RBP	15.51	■□□□□ 0.07
DDX39A-209	ENST00000589318	WDR4	P57081	412 aa	Known RBP	15.51	■□□□□ 0.07
DDX39A-209	ENST00000589318	BMPR2	Q13873	1038 aa		15.51	■□□□□ 0.07
DDX39A-209	ENST00000589318	RCN1	Q15293	331 aa		15.51	■□□□□ 0.07
DDX39A-209	ENST00000589318	SLC1A5	Q15758	541 aa		15.51	■□□□□ 0.07
DDX39A-209	ENST00000589318	LIN52	Q52LA3	116 aa		15.51	■□□□□ 0.07
DDX39A-209	ENST00000589318	MPP7	Q5T2T1	576 aa		15.51	■□□□□ 0.07
DDX39A-209	ENST00000589318	FYB2	Q5VWT5	728 aa		15.51	■□□□□ 0.07
DDX39A-209	ENST00000589318	GRASP	Q7Z6J2	395 aa	Predicted RBP	15.51	■□□□□ 0.07
DDX39A-209	ENST00000589318	ST13P4	Q8IZP2	240 aa	Predicted RBP	15.51	■□□□□ 0.07
DDX39A-209	ENST00000589318	BANP	Q8N9N5	519 aa		15.51	■□□□□ 0.07
DDX39A-209	ENST00000589318	LEMD2	Q8NC56	503 aa		15.51	■□□□□ 0.07
DDX39A-209	ENST00000589318	KLF6	Q99612	283 aa	Predicted RBP	15.51	■□□□□ 0.07
DDX39A-209	ENST00000589318	PBX4	Q9BYU1	374 aa		15.51	■□□□□ 0.07
DDX39A-209	ENST00000589318	MLXIPL	Q9NP71	852 aa		15.51	■□□□□ 0.07
DDX39A-209	ENST00000589318	ZFP69B	Q9UJL9	534 aa		15.51	■□□□□ 0.07
DDX39A-209	ENST00000589318	REV3L	O60673	3130 aa		15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	CCDC195	A0A1B0GUA6	201 aa		15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	SMIM31	A0A1B0GVY4	71 aa		15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	TYW5	A2RUC4	315 aa	Known RBP	15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318		F8W8V4	182 aa		15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	GOLGA8R	I6L899	631 aa		15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	EDF1	O60869	148 aa	Known RBP	15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	RFPL1	O75677	317 aa		15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	KRT37	O76014	449 aa		15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	LYN	P07948	512 aa		15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	RPA3	P35244	121 aa	Predicted RBP	15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	AVPR1A	P37288	418 aa		15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	CSK	P41240	450 aa		15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	SLC18A2	Q05940	514 aa		15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	ITGA9	Q13797	1035 aa		15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	KHDC1	Q4VXA5	237 aa	Known RBP	15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	PACS1	Q6VY07	963 aa		15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	RASSF3	Q86WH2	238 aa		15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	PHC3	Q8NDX5	983 aa		15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	PIP4K2C	Q8TBX8	421 aa		15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	DDI1	Q8WTU0	396 aa		15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	PTCD2	Q8WV60	388 aa	Known RBP	15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	CDKL2	Q92772	493 aa		15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	ATP2A3	Q93084	1043 aa		15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	ZSWIM3	Q96MP5	696 aa		15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	BTBD10	Q9BSF8	475 aa		15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	CINP	Q9BW66	212 aa	Predicted RBP	15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	EPB41L1	Q9H4G0	881 aa		15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	MRM3	Q9HC36	420 aa	Known RBP	15.5	■□□□□ 0.07
DDX39A-209	ENST00000589318	NUP210	Q8TEM1	1887 aa	Predicted RBP	15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	CCDC78	A2IDD5	438 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	SOBP	A7XYQ1	873 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	ASMTL	O95671	621 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	MT-ND3	P03897	115 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	ARNT	P27540	789 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	SERPINB9	P50453	376 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	CDH18	Q13634	790 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	PDK4	Q16654	411 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	MPPE1	Q53F39	396 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	SIRPB2	Q5JXA9	342 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	TEDDM1	Q5T9Z0	273 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	LINGO4	Q6UY18	593 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	TPGS1	Q6ZTW0	290 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	SLC25A41	Q8N5S1	370 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	C10orf82	Q8WW14	230 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	HIC2	Q96JB3	615 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	TRIB3	Q96RU7	358 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	TREX1	Q9NSU2	369 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	TDP1	Q9NUW8	608 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	PLK2	Q9NYY3	685 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	VPS51	Q9UID3	782 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	KRT38	O76015	456 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	PAPLN	O95428	1278 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	PABPC4L	P0CB38	370 aa	Known RBP	15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	PIM1	P11309	404 aa	Predicted RBP	15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	ADRA1D	P25100	572 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	FOXN2	P32314	431 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	RPL26	P61254	145 aa	Known RBP	15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	SLC14A2	Q15849	920 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	TMEM259	Q4ZIN3	620 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	ARHGAP15	Q53QZ3	475 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	HSP90AA5P	Q58FG0	334 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	ARMC3	Q5W041	872 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	ESRP1	Q6NXG1	681 aa	Known RBP	15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	KCNMB4	Q86W47	210 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	APCDD1	Q8J025	514 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	BBS5	Q8N3I7	341 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	ZNF513	Q8N8E2	541 aa	Predicted RBP	15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	DCAF4L2	Q8NA75	395 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	PPHLN1	Q8NEY8	458 aa	Known RBP	15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	ALKBH8	Q96BT7	664 aa	Known RBP	15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	MTBP	Q96DY7	904 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	FEM1C	Q96JP0	617 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	EXOC2	Q96KP1	924 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	LMLN	Q96KR4	655 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	AGAP2	Q99490	1192 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	MCMBP	Q9BTE3	642 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	SLC2A6	Q9UGQ3	507 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	VPS28	Q9UK41	221 aa		15.49	■□□□□ 0.07
DDX39A-209	ENST00000589318	EPOP	A6NHQ4	379 aa		15.48	■□□□□ 0.07
DDX39A-209	ENST00000589318	SERPINF2	P08697	491 aa		15.48	■□□□□ 0.07

Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms