RNA–Protein interactions for RNA: ENST00000577751.5

SS18-208, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-208ENST00000577751 PDCD6IPQ8WUM4 868 aaKnown RBP19.43■□□□□ 0.7
SS18-208ENST00000577751 TFB1MQ8WVM0 346 aaKnown RBP19.43■□□□□ 0.7
SS18-208ENST00000577751 UBE2Q2Q8WVN8 375 aa19.43■□□□□ 0.7
SS18-208ENST00000577751 GUCA1BQ9UMX6 200 aa19.43■□□□□ 0.7
SS18-208ENST00000577751 PACSIN2Q9UNF0 486 aaPredicted RBP19.43■□□□□ 0.7
SS18-208ENST00000577751 TTLL3Q9Y4R7 772 aa19.43■□□□□ 0.7
SS18-208ENST00000577751 CABIN1Q9Y6J0 2220 aa19.42■□□□□ 0.7
SS18-208ENST00000577751 A6NNZ2 444 aa19.42■□□□□ 0.7
SS18-208ENST00000577751 FPGTO14772 594 aa19.42■□□□□ 0.7
SS18-208ENST00000577751 PCDHGA12O60330 932 aa19.42■□□□□ 0.7
SS18-208ENST00000577751 KCNK5O95279 499 aa19.42■□□□□ 0.7
SS18-208ENST00000577751 PDHA1P08559 390 aa19.42■□□□□ 0.7
SS18-208ENST00000577751 RXRGP48443 463 aa19.42■□□□□ 0.7
SS18-208ENST00000577751 XRCC4Q13426 336 aa19.42■□□□□ 0.7
SS18-208ENST00000577751 TEX44Q53QW1 395 aa19.42■□□□□ 0.7
SS18-208ENST00000577751 PRAMEF14Q5SWL7 426 aa19.42■□□□□ 0.7
SS18-208ENST00000577751 AADACL2Q6P093 401 aa19.42■□□□□ 0.7
SS18-208ENST00000577751 LIPIQ6XZB0 460 aa19.42■□□□□ 0.7
SS18-208ENST00000577751 Q6ZSR6 202 aa19.42■□□□□ 0.7
SS18-208ENST00000577751 DCP2Q8IU60 420 aaKnown RBP19.42■□□□□ 0.7
SS18-208ENST00000577751 CBARPQ8N350 705 aaPredicted RBP19.42■□□□□ 0.7
SS18-208ENST00000577751 UBL4BQ8N7F7 174 aa19.42■□□□□ 0.7
SS18-208ENST00000577751 PAF1Q8N7H5 531 aa19.42■□□□□ 0.7
SS18-208ENST00000577751 SCRN2Q96FV2 425 aa19.42■□□□□ 0.7
SS18-208ENST00000577751 MCCC1Q96RQ3 725 aaPredicted RBP19.42■□□□□ 0.7
SS18-208ENST00000577751 C1QTNF7Q9BXJ2 289 aa19.42■□□□□ 0.7
SS18-208ENST00000577751 TDRD1Q9BXT4 1180 aaKnown RBP19.42■□□□□ 0.7
SS18-208ENST00000577751 B4GALT6Q9UBX8 382 aa19.42■□□□□ 0.7
SS18-208ENST00000577751 COQ6Q9Y2Z9 468 aa19.42■□□□□ 0.7
SS18-208ENST00000577751 PCNX2A6NKB5 2137 aa19.41■□□□□ 0.7
SS18-208ENST00000577751 HACD1B0YJ81 288 aa19.41■□□□□ 0.7
SS18-208ENST00000577751 PRLP01236 227 aa19.41■□□□□ 0.7
SS18-208ENST00000577751 CEACAM1P13688 526 aa19.41■□□□□ 0.7
SS18-208ENST00000577751 GM2AP17900 193 aa19.41■□□□□ 0.7
SS18-208ENST00000577751 PTPN3P26045 913 aa19.41■□□□□ 0.7
SS18-208ENST00000577751 IGFALSP35858 605 aa19.41■□□□□ 0.7
SS18-208ENST00000577751 CETN2P41208 172 aa19.41■□□□□ 0.7
SS18-208ENST00000577751 CCT8P50990 548 aa19.41■□□□□ 0.7
SS18-208ENST00000577751 PFN3P60673 137 aa19.41■□□□□ 0.7
SS18-208ENST00000577751 SKOR1P84550 965 aa19.41■□□□□ 0.7
SS18-208ENST00000577751 WASHC5Q12768 1159 aa19.41■□□□□ 0.7
SS18-208ENST00000577751 NOMO1Q15155 1222 aa19.41■□□□□ 0.7
SS18-208ENST00000577751 PPM1JQ5JR12 505 aa19.41■□□□□ 0.7
SS18-208ENST00000577751 FAM182AQ5T1J6 154 aa19.41■□□□□ 0.7
SS18-208ENST00000577751 SLC22A18ASQ8N1D0 253 aa19.41■□□□□ 0.7
SS18-208ENST00000577751 OXR1Q8N573 874 aa19.41■□□□□ 0.7
SS18-208ENST00000577751 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP19.41■□□□□ 0.7
SS18-208ENST00000577751 HAUS1Q96CS2 278 aa19.41■□□□□ 0.7
SS18-208ENST00000577751 IMP4Q96G21 291 aaKnown RBP19.41■□□□□ 0.7
SS18-208ENST00000577751 TEKT5Q96M29 485 aa19.41■□□□□ 0.7
SS18-208ENST00000577751 AGAP3Q96P47 875 aa19.41■□□□□ 0.7
SS18-208ENST00000577751 CEP41Q9BYV8 373 aa19.41■□□□□ 0.7
SS18-208ENST00000577751 MBNL1Q9NR56 388 aaKnown RBP19.41■□□□□ 0.7
SS18-208ENST00000577751 YKT6O15498 198 aa19.4■□□□□ 0.7
SS18-208ENST00000577751 MTSS1O43312 755 aa19.4■□□□□ 0.7
SS18-208ENST00000577751 NRDCO43847 1150 aa19.4■□□□□ 0.7
SS18-208ENST00000577751 SH3BP5O60239 455 aa19.4■□□□□ 0.7
SS18-208ENST00000577751 NFKBIAP25963 317 aa19.4■□□□□ 0.7
SS18-208ENST00000577751 VIPR1P32241 457 aa19.4■□□□□ 0.7
SS18-208ENST00000577751 RABIFP47224 123 aa19.4■□□□□ 0.7
SS18-208ENST00000577751 SUZ12Q15022 739 aaKnown RBP19.4■□□□□ 0.7
SS18-208ENST00000577751 WSCD2Q2TBF2 565 aa19.4■□□□□ 0.7
SS18-208ENST00000577751 ZC3H18Q86VM9 953 aaKnown RBP19.4■□□□□ 0.7
SS18-208ENST00000577751 DEFB124Q8NES8 71 aa19.4■□□□□ 0.7
SS18-208ENST00000577751 TADA1Q96BN2 335 aa19.4■□□□□ 0.7
SS18-208ENST00000577751 QKIQ96PU8 341 aaKnown RBP eCLIP19.4■□□□□ 0.73e-6■■■■□ 23
SS18-208ENST00000577751 SLC25A51Q9H1U9 297 aa19.4■□□□□ 0.7
SS18-208ENST00000577751 CHKBQ9Y259 395 aa19.4■□□□□ 0.7
SS18-208ENST00000577751 A8MX80 341 aa19.39■□□□□ 0.69
SS18-208ENST00000577751 TOR1BO14657 336 aa19.39■□□□□ 0.69
SS18-208ENST00000577751 LZTS3O60299 673 aaPredicted RBP19.39■□□□□ 0.69
SS18-208ENST00000577751 TJP3O95049 919 aa19.39■□□□□ 0.69
SS18-208ENST00000577751 ELFN1P0C7U0 828 aa19.39■□□□□ 0.69
SS18-208ENST00000577751 CYP2A6P11509 494 aaPredicted RBP19.39■□□□□ 0.69
SS18-208ENST00000577751 CA4P22748 312 aa19.39■□□□□ 0.69
SS18-208ENST00000577751 CD86P42081 329 aa19.39■□□□□ 0.69
SS18-208ENST00000577751 ARRB1P49407 418 aaPredicted RBP19.39■□□□□ 0.69
SS18-208ENST00000577751 NOVA1P51513 510 aaKnown RBP19.39■□□□□ 0.69
SS18-208ENST00000577751 RPL26P61254 145 aaKnown RBP19.39■□□□□ 0.69
SS18-208ENST00000577751 ZNF211Q13398 564 aaPredicted RBP19.39■□□□□ 0.69
SS18-208ENST00000577751 LRRC14Q15048 493 aa19.39■□□□□ 0.69
SS18-208ENST00000577751 PSAPL1Q6NUJ1 521 aa19.39■□□□□ 0.69
SS18-208ENST00000577751 KDM7AQ6ZMT4 941 aa19.39■□□□□ 0.69
SS18-208ENST00000577751 PTAR1Q7Z6K3 402 aaPredicted RBP19.39■□□□□ 0.69
SS18-208ENST00000577751 NAXDQ8IW45 347 aa19.39■□□□□ 0.69
SS18-208ENST00000577751 ACTL9Q8TC94 416 aa19.39■□□□□ 0.69
SS18-208ENST00000577751 SAP25Q8TEE9 199 aa19.39■□□□□ 0.69
SS18-208ENST00000577751 IFT43Q96FT9 208 aa19.39■□□□□ 0.69
SS18-208ENST00000577751 CAMK1GQ96NX5 476 aa19.39■□□□□ 0.69
SS18-208ENST00000577751 VAT1Q99536 393 aa19.39■□□□□ 0.69
SS18-208ENST00000577751 SLC32A1Q9H598 525 aa19.39■□□□□ 0.69
SS18-208ENST00000577751 GLOD4Q9HC38 313 aa19.39■□□□□ 0.69
SS18-208ENST00000577751 PCDH9Q9HC56 1237 aa19.39■□□□□ 0.69
SS18-208ENST00000577751 SEPT10Q9P0V9 454 aa19.39■□□□□ 0.69
SS18-208ENST00000577751 RPL26L1Q9UNX3 145 aaKnown RBP19.39■□□□□ 0.69
SS18-208ENST00000577751 CACNA1AO00555 2505 aa19.39■□□□□ 0.69
SS18-208ENST00000577751 A0A0J9YYE9 177 aa19.38■□□□□ 0.69
SS18-208ENST00000577751 SPTY2D1-AS1A0A0U1RR47 76 aa19.38■□□□□ 0.69
SS18-208ENST00000577751 CNOT1A5YKK6 2376 aaKnown RBP19.38■□□□□ 0.69
SS18-208ENST00000577751 NPIPB15A6NHN6 443 aaPredicted RBP19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms