RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 SLC2A3P11169 496 aa22.88■■□□□ 1.25
VPS53-211ENST00000571805 IMPDH1P20839 514 aa22.88■■□□□ 1.25
VPS53-211ENST00000571805 TNK2Q07912 1038 aa22.88■■□□□ 1.25
VPS53-211ENST00000571805 DDR2Q16832 855 aa22.88■■□□□ 1.25
VPS53-211ENST00000571805 SIRPB2Q5JXA9 342 aa22.88■■□□□ 1.25
VPS53-211ENST00000571805 RASIP1Q5U651 963 aa22.88■■□□□ 1.25
VPS53-211ENST00000571805 ARPINQ7Z6K5 226 aa22.88■■□□□ 1.25
VPS53-211ENST00000571805 SLC22A9Q8IVM8 553 aa22.88■■□□□ 1.25
VPS53-211ENST00000571805 MFN1Q8IWA4 741 aa22.88■■□□□ 1.25
VPS53-211ENST00000571805 NUP93Q8N1F7 819 aa22.88■■□□□ 1.25
VPS53-211ENST00000571805 PGBD5Q8N414 524 aa22.88■■□□□ 1.25
VPS53-211ENST00000571805 PCDH20Q8N6Y1 951 aaKnown RBP22.88■■□□□ 1.25
VPS53-211ENST00000571805 ARRDC2Q8TBH0 407 aa22.88■■□□□ 1.25
VPS53-211ENST00000571805 TRPC7Q9HCX4 862 aa22.88■■□□□ 1.25
VPS53-211ENST00000571805 MRGBPQ9NV56 204 aa22.88■■□□□ 1.25
VPS53-211ENST00000571805 RAB26Q9ULW5 256 aa22.88■■□□□ 1.25
VPS53-211ENST00000571805 PSMD12O00232 456 aaPredicted RBP22.87■■□□□ 1.25
VPS53-211ENST00000571805 PABPC4LP0CB38 370 aaKnown RBP22.87■■□□□ 1.25
VPS53-211ENST00000571805 TCN1P20061 433 aaPredicted RBP22.87■■□□□ 1.25
VPS53-211ENST00000571805 STX5Q13190 355 aa22.87■■□□□ 1.25
VPS53-211ENST00000571805 CYHR1Q6ZMK1 362 aa22.87■■□□□ 1.25
VPS53-211ENST00000571805 ISCA2Q86U28 154 aa22.87■■□□□ 1.25
VPS53-211ENST00000571805 AFAP1L2Q8N4X5 818 aa22.87■■□□□ 1.25
VPS53-211ENST00000571805 TMEM102Q8N9M5 508 aaPredicted RBP22.87■■□□□ 1.25
VPS53-211ENST00000571805 CATSPER1Q8NEC5 780 aa22.87■■□□□ 1.25
VPS53-211ENST00000571805 OR6P1Q8NGX9 317 aa22.87■■□□□ 1.25
VPS53-211ENST00000571805 NCSTNQ92542 709 aa22.87■■□□□ 1.25
VPS53-211ENST00000571805 ASB9Q96DX5 294 aa22.87■■□□□ 1.25
VPS53-211ENST00000571805 CACNA2D2Q9NY47 1150 aa22.87■■□□□ 1.25
VPS53-211ENST00000571805 MTF2Q9Y483 593 aaPredicted RBP22.87■■□□□ 1.25
VPS53-211ENST00000571805 KCTD3Q9Y597 815 aa22.87■■□□□ 1.25
VPS53-211ENST00000571805 IGLV3-10A0A075B6K4 115 aa22.87■■□□□ 1.25
VPS53-211ENST00000571805 E7ENX8 843 aa22.87■■□□□ 1.25
VPS53-211ENST00000571805 INPPL1O15357 1258 aa22.87■■□□□ 1.25
VPS53-211ENST00000571805 CRTAMO95727 393 aa22.87■■□□□ 1.25
VPS53-211ENST00000571805 GSTT1P30711 240 aa22.87■■□□□ 1.25
VPS53-211ENST00000571805 HUNKP57058 714 aa22.87■■□□□ 1.25
VPS53-211ENST00000571805 USP46P62068 366 aa22.87■■□□□ 1.25
VPS53-211ENST00000571805 CACNB2Q08289 660 aaPredicted RBP22.87■■□□□ 1.25
VPS53-211ENST00000571805 EML3Q32P44 896 aa22.87■■□□□ 1.25
VPS53-211ENST00000571805 GPR158Q5T848 1215 aa22.87■■□□□ 1.25
VPS53-211ENST00000571805 ADA2Q9NZK5 511 aa22.87■■□□□ 1.25
VPS53-211ENST00000571805 TRAF6Q9Y4K3 522 aa22.87■■□□□ 1.25
VPS53-211ENST00000571805 LOC285095A0A1B0GVY8 99 aa22.86■■□□□ 1.25
VPS53-211ENST00000571805 ATXN1LP0C7T5 689 aaKnown RBP22.86■■□□□ 1.25
VPS53-211ENST00000571805 HDCP19113 662 aa22.86■■□□□ 1.25
VPS53-211ENST00000571805 SLC26A3P40879 764 aa22.86■■□□□ 1.25
VPS53-211ENST00000571805 FASTKQ14296 549 aaKnown RBP22.86■■□□□ 1.25
VPS53-211ENST00000571805 FAM219BQ5XKK7 198 aa22.86■■□□□ 1.25
VPS53-211ENST00000571805 ZNF280BQ86YH2 543 aa22.86■■□□□ 1.25
VPS53-211ENST00000571805 IGSF8Q969P0 613 aa22.86■■□□□ 1.25
VPS53-211ENST00000571805 UNC93B1Q9H1C4 597 aa22.86■■□□□ 1.25
VPS53-211ENST00000571805 ALG9Q9H6U8 611 aa22.86■■□□□ 1.25
VPS53-211ENST00000571805 SP110Q9HB58 689 aa22.86■■□□□ 1.25
VPS53-211ENST00000571805 UXTQ9UBK9 157 aaPredicted RBP22.86■■□□□ 1.25
VPS53-211ENST00000571805 OR51F1A6NGY5 319 aa22.86■■□□□ 1.25
VPS53-211ENST00000571805 LDB2O43679 373 aa22.86■■□□□ 1.25
VPS53-211ENST00000571805 RNASEH2AO75792 299 aaKnown RBP22.86■■□□□ 1.25
VPS53-211ENST00000571805 OAZ2O95190 189 aa22.86■■□□□ 1.25
VPS53-211ENST00000571805 PENKP01210 267 aaPredicted RBP22.86■■□□□ 1.25
VPS53-211ENST00000571805 SMIM18P0DKX4 95 aa22.86■■□□□ 1.25
VPS53-211ENST00000571805 PDAP1Q13442 181 aaKnown RBP22.86■■□□□ 1.25
VPS53-211ENST00000571805 TRIM25Q14258 630 aaKnown RBP22.86■■□□□ 1.25
VPS53-211ENST00000571805 MAPRE2Q15555 327 aa22.86■■□□□ 1.25
VPS53-211ENST00000571805 AGKQ53H12 422 aa22.86■■□□□ 1.25
VPS53-211ENST00000571805 REP15Q6BDI9 236 aa22.86■■□□□ 1.25
VPS53-211ENST00000571805 SPATA24Q86W54 205 aa22.86■■□□□ 1.25
VPS53-211ENST00000571805 RASAL3Q86YV0 1011 aa22.86■■□□□ 1.25
VPS53-211ENST00000571805 L3HYPDHQ96EM0 354 aa22.86■■□□□ 1.25
VPS53-211ENST00000571805 C8orf48Q96LL4 319 aa22.86■■□□□ 1.25
VPS53-211ENST00000571805 GMIPQ9P107 970 aa22.86■■□□□ 1.25
VPS53-211ENST00000571805 SUCOQ9UBS9 1254 aaKnown RBP22.86■■□□□ 1.25
VPS53-211ENST00000571805 MANSC4A6NHS7 340 aaPredicted RBP22.85■■□□□ 1.25
VPS53-211ENST00000571805 PMLP29590 882 aa22.85■■□□□ 1.25
VPS53-211ENST00000571805 ZNF678Q5SXM1 525 aa22.85■■□□□ 1.25
VPS53-211ENST00000571805 PAOXQ6QHF9 649 aa22.85■■□□□ 1.25
VPS53-211ENST00000571805 TRMOQ9BU70 441 aa22.85■■□□□ 1.25
VPS53-211ENST00000571805 CCDC167Q9P0B6 97 aa22.85■■□□□ 1.25
VPS53-211ENST00000571805 PCDHGB4Q9UN71 923 aa22.85■■□□□ 1.25
VPS53-211ENST00000571805 PCDHGB5Q9Y5G0 923 aa22.85■■□□□ 1.25
VPS53-211ENST00000571805 KIF3CO14782 793 aa22.85■■□□□ 1.25
VPS53-211ENST00000571805 TRIM24O15164 1050 aa22.85■■□□□ 1.25
VPS53-211ENST00000571805 GRK4P32298 578 aa22.85■■□□□ 1.25
VPS53-211ENST00000571805 NKX3-2P78367 333 aa22.85■■□□□ 1.25
VPS53-211ENST00000571805 FBXL22Q6P050 247 aa22.85■■□□□ 1.25
VPS53-211ENST00000571805 LARP4Q71RC2 724 aaKnown RBP eCLIP22.85■■□□□ 1.25
VPS53-211ENST00000571805 PIM3Q86V86 326 aa22.85■■□□□ 1.25
VPS53-211ENST00000571805 TRIM4Q9C037 500 aa22.85■■□□□ 1.25
VPS53-211ENST00000571805 FBXO44Q9H4M3 255 aa22.85■■□□□ 1.25
VPS53-211ENST00000571805 Q9H521 79 aa22.85■■□□□ 1.25
VPS53-211ENST00000571805 SPC25Q9HBM1 224 aa22.85■■□□□ 1.25
VPS53-211ENST00000571805 AP4B1Q9Y6B7 739 aa22.85■■□□□ 1.25
VPS53-211ENST00000571805 ADAMTS4O75173 837 aa22.84■■□□□ 1.25
VPS53-211ENST00000571805 ASGR1P07306 291 aa22.84■■□□□ 1.25
VPS53-211ENST00000571805 PRAMEP78395 509 aa22.84■■□□□ 1.25
VPS53-211ENST00000571805 TIAL1Q01085 375 aaKnown RBP eCLIP22.84■■□□□ 1.25
VPS53-211ENST00000571805 EFEMP1Q12805 493 aa22.84■■□□□ 1.25
VPS53-211ENST00000571805 UNC50Q53HI1 259 aa22.84■■□□□ 1.25
VPS53-211ENST00000571805 DCP1BQ8IZD4 617 aaKnown RBP22.84■■□□□ 1.25
VPS53-211ENST00000571805 PTERQ96BW5 349 aa22.84■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms