RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 GSRP00390 522 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 TIMP2P16035 220 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 TSPAN7P41732 249 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 MAZP56270 477 aaKnown RBP11.15□□□□□ -0.62
VPS53-207ENST00000570510 RNASE9P60153 205 aaKnown RBP11.15□□□□□ -0.62
VPS53-207ENST00000570510 PDCLQ13371 301 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 ERV3-1Q14264 604 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 TSR1Q2NL82 804 aaKnown RBP11.15□□□□□ -0.62
VPS53-207ENST00000570510 WSCD2Q2TBF2 565 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 EIF2S3LQ2VIR3 472 aaKnown RBP11.15□□□□□ -0.62
VPS53-207ENST00000570510 SNAP47Q5SQN1 464 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 NKAIN2Q5VXU1 208 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 ERAP2Q6P179 960 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 SFTPA2Q8IWL1 248 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 PAF1Q8N7H5 531 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 MLKLQ8NB16 471 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 ZDHHC1Q8WTX9 485 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 KAT5Q92993 513 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 CTRCQ99895 268 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 NCAPGQ9BPX3 1015 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 ZPBPQ9BS86 351 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 SLC29A3Q9BZD2 475 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 ZYG11BQ9C0D3 744 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 ASNSD1Q9NWL6 643 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 OCIAD1Q9NX40 245 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 RRN3Q9NYV6 651 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 STAP1Q9ULZ2 295 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 POLHQ9Y253 713 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 SNX10Q9Y5X0 201 aa11.15□□□□□ -0.62
VPS53-207ENST00000570510 DRGXA6NNA5 263 aa11.14□□□□□ -0.63
VPS53-207ENST00000570510 A8MU76 341 aa11.14□□□□□ -0.63
VPS53-207ENST00000570510 K7EM74 188 aa11.14□□□□□ -0.63
VPS53-207ENST00000570510 ZMPSTE24O75844 475 aa11.14□□□□□ -0.63
VPS53-207ENST00000570510 F9P00740 461 aa11.14□□□□□ -0.63
VPS53-207ENST00000570510 ITIH2P19823 946 aa11.14□□□□□ -0.63
VPS53-207ENST00000570510 CD1CP29017 333 aa11.14□□□□□ -0.63
VPS53-207ENST00000570510 GNA15P30679 374 aa11.14□□□□□ -0.63
VPS53-207ENST00000570510 GPR3P46089 330 aa11.14□□□□□ -0.63
VPS53-207ENST00000570510 FMO5P49326 533 aa11.14□□□□□ -0.63
VPS53-207ENST00000570510 SUOXP51687 545 aa11.14□□□□□ -0.63
VPS53-207ENST00000570510 MARSP56192 900 aaKnown RBP11.14□□□□□ -0.63
VPS53-207ENST00000570510 ARF5P84085 180 aa11.14□□□□□ -0.63
VPS53-207ENST00000570510 DEUP1Q05D60 604 aa11.14□□□□□ -0.63
VPS53-207ENST00000570510 ILF3Q12906 894 aaKnown RBP eCLIP11.14□□□□□ -0.63
VPS53-207ENST00000570510 MTM1Q13496 603 aa11.14□□□□□ -0.63
VPS53-207ENST00000570510 PEX6Q13608 980 aa11.14□□□□□ -0.63
VPS53-207ENST00000570510 CRTC2Q53ET0 693 aaPredicted RBP11.14□□□□□ -0.63
VPS53-207ENST00000570510 ATXN7L2Q5T6C5 722 aaPredicted RBP11.14□□□□□ -0.63
VPS53-207ENST00000570510 C11orf57Q6ZUT1 292 aaPredicted RBP11.14□□□□□ -0.63
VPS53-207ENST00000570510 ESX1Q8N693 406 aa11.14□□□□□ -0.63
VPS53-207ENST00000570510 OR1E3Q8WZA6 343 aa11.14□□□□□ -0.63
VPS53-207ENST00000570510 RTP4Q96DX8 246 aa11.14□□□□□ -0.63
VPS53-207ENST00000570510 HMCESQ96FZ2 354 aa11.14□□□□□ -0.63
VPS53-207ENST00000570510 GDAP1L1Q96MZ0 367 aa11.14□□□□□ -0.63
VPS53-207ENST00000570510 GSDMCQ9BYG8 508 aa11.14□□□□□ -0.63
VPS53-207ENST00000570510 ZNF768Q9H5H4 540 aaKnown RBP11.14□□□□□ -0.63
VPS53-207ENST00000570510 MRPL40Q9NQ50 206 aaKnown RBP11.14□□□□□ -0.63
VPS53-207ENST00000570510 PIGVQ9NUD9 493 aa11.14□□□□□ -0.63
VPS53-207ENST00000570510 DONSONQ9NYP3 566 aa11.14□□□□□ -0.63
VPS53-207ENST00000570510 TLK1Q9UKI8 766 aa11.14□□□□□ -0.63
VPS53-207ENST00000570510 ACTL7AQ9Y615 435 aa11.14□□□□□ -0.63
VPS53-207ENST00000570510 TMEM202A6NGA9 273 aa11.13□□□□□ -0.63
VPS53-207ENST00000570510 PDE2AO00408 941 aaPredicted RBP11.13□□□□□ -0.63
VPS53-207ENST00000570510 TNFRSF10CO14798 259 aa11.13□□□□□ -0.63
VPS53-207ENST00000570510 KATNA1O75449 491 aa11.13□□□□□ -0.63
VPS53-207ENST00000570510 STK17BO94768 372 aa11.13□□□□□ -0.63
VPS53-207ENST00000570510 ECEL1O95672 775 aa11.13□□□□□ -0.63
VPS53-207ENST00000570510 IGSF6O95976 241 aa11.13□□□□□ -0.63
VPS53-207ENST00000570510 RNF224P0DH78 156 aa11.13□□□□□ -0.63
VPS53-207ENST00000570510 USP8P40818 1118 aa11.13□□□□□ -0.63
VPS53-207ENST00000570510 SULT1E1P49888 294 aa11.13□□□□□ -0.63
VPS53-207ENST00000570510 GCNT1Q02742 428 aa11.13□□□□□ -0.63
VPS53-207ENST00000570510 MEA1Q16626 185 aa11.13□□□□□ -0.63
VPS53-207ENST00000570510 CCDC40Q4G0X9 1142 aa11.13□□□□□ -0.63
VPS53-207ENST00000570510 TMEM52BQ4KMG9 183 aa11.13□□□□□ -0.63
VPS53-207ENST00000570510 LEKR1Q6ZMV7 388 aa11.13□□□□□ -0.63
VPS53-207ENST00000570510 CCL4L1Q8NHW4 92 aa11.13□□□□□ -0.63
VPS53-207ENST00000570510 ZNF606Q8WXB4 792 aa11.13□□□□□ -0.63
VPS53-207ENST00000570510 SLC35C1Q96A29 364 aa11.13□□□□□ -0.63
VPS53-207ENST00000570510 C1orf74Q96LT6 269 aa11.13□□□□□ -0.63
VPS53-207ENST00000570510 CARS2Q9HA77 564 aaKnown RBP11.13□□□□□ -0.63
VPS53-207ENST00000570510 FGF22Q9HCT0 170 aa11.13□□□□□ -0.63
VPS53-207ENST00000570510 TMEM51Q9NW97 253 aa11.13□□□□□ -0.63
VPS53-207ENST00000570510 ARHGEF38Q9NXL2 777 aa11.13□□□□□ -0.63
VPS53-207ENST00000570510 DKK3Q9UBP4 350 aa11.13□□□□□ -0.63
VPS53-207ENST00000570510 MAN1B1Q9UKM7 699 aa11.13□□□□□ -0.63
VPS53-207ENST00000570510 RPS6KL1Q9Y6S9 549 aa11.13□□□□□ -0.63
VPS53-207ENST00000570510 POLR1CO15160 346 aaPredicted RBP11.12□□□□□ -0.63
VPS53-207ENST00000570510 TEX33O43247 280 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 BUB1O43683 1085 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 GADD45BO75293 160 aaPredicted RBP11.12□□□□□ -0.63
VPS53-207ENST00000570510 DAB1O75553 588 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 CLDN1O95832 211 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 THRAP10827 490 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 CCNB1P14635 433 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 VARSP26640 1264 aaKnown RBP11.12□□□□□ -0.63
VPS53-207ENST00000570510 ERCC5P28715 1186 aaPredicted RBP11.12□□□□□ -0.63
VPS53-207ENST00000570510 DLSTP36957 453 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 STAT1P42224 750 aa11.12□□□□□ -0.63
VPS53-207ENST00000570510 CXCR3P49682 368 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms