RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 DR1Q01658 176 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 CREB5Q02930 508 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 RAD51Q06609 339 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 GPS1Q13098 491 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 TUBB2AQ13885 445 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 DHX34Q14147 1143 aaKnown RBP9.33□□□□□ -0.92
VPS35-211ENST00000569950 TPSAB1Q15661 275 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 CNGA3Q16281 694 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 PCSK7Q16549 785 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 TTC31Q49AM3 519 aaPredicted RBP9.33□□□□□ -0.92
VPS35-211ENST00000569950 ARMC12Q5T9G4 340 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 SEL1L3Q68CR1 1132 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 CRTC1Q6UUV9 634 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 KDM7AQ6ZMT4 941 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 KDELC2Q7Z4H8 507 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 KBTBD6Q86V97 674 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 CAND1Q86VP6 1230 aaKnown RBP9.33□□□□□ -0.92
VPS35-211ENST00000569950 PELI3Q8N2H9 469 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 CCDC89Q8N998 374 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 LPCAT1Q8NF37 534 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 IPMKQ8NFU5 416 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 GAB3Q8WWW8 586 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 COQ10AQ96MF6 247 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 KLF6Q99612 283 aaPredicted RBP9.33□□□□□ -0.92
VPS35-211ENST00000569950 WDR83Q9BRX9 315 aaKnown RBP9.33□□□□□ -0.92
VPS35-211ENST00000569950 LRRC1Q9BTT6 524 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 TUBB2BQ9BVA1 445 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 FICDQ9BVA6 458 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 CARD6Q9BX69 1037 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 C1QTNF2Q9BXJ5 285 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 DUSP15Q9H1R2 295 aaPredicted RBP9.33□□□□□ -0.92
VPS35-211ENST00000569950 PLAC1Q9HBJ0 212 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 CASS4Q9NQ75 786 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 EIF2B3Q9NR50 452 aaKnown RBP9.33□□□□□ -0.92
VPS35-211ENST00000569950 PIH1D1Q9NWS0 290 aaKnown RBP9.33□□□□□ -0.92
VPS35-211ENST00000569950 BCCIPQ9P287 314 aaKnown RBP eCLIP9.33□□□□□ -0.92
VPS35-211ENST00000569950 DMGDHQ9UI17 866 aaKnown RBP9.33□□□□□ -0.92
VPS35-211ENST00000569950 PHTF1Q9UMS5 762 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 CABIN1Q9Y6J0 2220 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 ADAMTS9Q9P2N4 1935 aa9.33□□□□□ -0.92
VPS35-211ENST00000569950 RALGAPA1Q6GYQ0 2036 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 H0Y858 1186 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 GAPDHSO14556 408 aaPredicted RBP9.32□□□□□ -0.92
VPS35-211ENST00000569950 DNALI1O14645 258 aaPredicted RBP9.32□□□□□ -0.92
VPS35-211ENST00000569950 RAD51BO15315 384 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 HEXIM1O94992 359 aaKnown RBP9.32□□□□□ -0.92
VPS35-211ENST00000569950 SEMA4FO95754 770 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 C1SP09871 688 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 PSMA3P25788 255 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 PTGER3P43115 390 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 GRIA4P48058 902 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 LMNB2Q03252 620 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 PTSQ03393 145 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 CBLBQ13191 982 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 AGERQ15109 404 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 ZNF284Q2VY69 593 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 PLK5Q496M5 336 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 PMS2CLQ68D20 193 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 ZDHHC24Q6UX98 284 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 LIPIQ6XZB0 460 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 HSD11B1LQ7Z5J1 315 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 TECPR1Q7Z6L1 1165 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 TTC7BQ86TV6 843 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 TRIM69Q86WT6 500 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 PGBD3Q8N328 593 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 OR2T34Q8NGX1 318 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 PDCD6IPQ8WUM4 868 aaKnown RBP9.32□□□□□ -0.92
VPS35-211ENST00000569950 RAB7BQ96AH8 199 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 BIRC7Q96CA5 298 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 PPP1R16AQ96I34 528 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 ZC3H10Q96K80 434 aaKnown RBP9.32□□□□□ -0.92
VPS35-211ENST00000569950 PWWP2AQ96N64 755 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 OMDQ99983 421 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 TBL1YQ9BQ87 522 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 ERP44Q9BS26 406 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 GPR174Q9BXC1 333 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 SGK2Q9HBY8 427 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 RRAGDQ9NQL2 400 aaPredicted RBP9.32□□□□□ -0.92
VPS35-211ENST00000569950 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.32□□□□□ -0.92
VPS35-211ENST00000569950 ARIH1Q9Y4X5 557 aaPredicted RBP9.32□□□□□ -0.92
VPS35-211ENST00000569950 KCTD3Q9Y597 815 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 PCDHGA2Q9Y5H1 932 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 R4GN57 208 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 FAM186AA6NE01 2351 aa9.32□□□□□ -0.92
VPS35-211ENST00000569950 ARID1BQ8NFD5 2236 aaPredicted RBP9.31□□□□□ -0.92
VPS35-211ENST00000569950 A0A1W2PQ67 120 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 FAM187AA6NFU0 413 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 ERI2A8K979 691 aaKnown RBP9.31□□□□□ -0.92
VPS35-211ENST00000569950 METTL12A8MUP2 240 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 A8MX80 341 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 LDB2O43679 373 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 RPP40O75818 363 aaKnown RBP9.31□□□□□ -0.92
VPS35-211ENST00000569950 SEC31AO94979 1220 aaKnown RBP9.31□□□□□ -0.92
VPS35-211ENST00000569950 GAS8O95995 478 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 SOD1P00441 154 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 FGF1P05230 155 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 APRTP07741 180 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 ACADMP11310 421 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 HLA-DPA1P20036 260 aa9.31□□□□□ -0.92
VPS35-211ENST00000569950 ECHS1P30084 290 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms