RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	APOO	Q9BUR5	198 aa		6.96	□□□□□ -1.3
SF3B3-209	ENST00000567635	DUSP23	Q9BVJ7	150 aa		6.96	□□□□□ -1.3
SF3B3-209	ENST00000567635	PACSIN1	Q9BY11	444 aa		6.96	□□□□□ -1.3
SF3B3-209	ENST00000567635	SLC13A1	Q9BZW2	595 aa		6.96	□□□□□ -1.3
SF3B3-209	ENST00000567635	CAAP1	Q9H8G2	361 aa		6.96	□□□□□ -1.3
SF3B3-209	ENST00000567635	USP29	Q9HBJ7	922 aa		6.96	□□□□□ -1.3
SF3B3-209	ENST00000567635	NOD2	Q9HC29	1040 aa		6.96	□□□□□ -1.3
SF3B3-209	ENST00000567635	SCUBE2	Q9NQ36	999 aa		6.96	□□□□□ -1.3
SF3B3-209	ENST00000567635	EVA1B	Q9NVM1	165 aa		6.96	□□□□□ -1.3
SF3B3-209	ENST00000567635	NCKIPSD	Q9NZQ3	722 aa		6.96	□□□□□ -1.3
SF3B3-209	ENST00000567635	SPAST	Q9UBP0	616 aa		6.96	□□□□□ -1.3
SF3B3-209	ENST00000567635	PCDHGC4	Q9Y5F7	938 aa		6.96	□□□□□ -1.3
SF3B3-209	ENST00000567635	DSP	P15924	2871 aa	Known RBP	6.96	□□□□□ -1.3
SF3B3-209	ENST00000567635		A8MX80	341 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	AKR1B15	C9JRZ8	316 aa	Predicted RBP	6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	TPP1	O14773	563 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	HTRA2	O43464	458 aa	Predicted RBP	6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	SOCS5	O75159	536 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	GCAT	O75600	419 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	RECQL5	O94762	991 aa	Predicted RBP	6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	CD48	P09326	243 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	ELFN1	P0C7U0	828 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	CR2	P20023	1033 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	CES1	P23141	567 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	KDELR1	P24390	212 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	NFKBIA	P25963	317 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	HTR1B	P28222	390 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	MAN1A1	P33908	653 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	GJC1	P36383	396 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	ARHGAP25	P42331	645 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	MMP13	P45452	471 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	BLK	P51451	505 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	TAS2R40	P59535	323 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	CYP4F3	Q08477	520 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	ITK	Q08881	620 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	TARDBP	Q13148	414 aa	Known RBP eCLIP	6.95	□□□□□ -1.3	2e-12	■■■■□ 25.1
SF3B3-209	ENST00000567635	MESD	Q14696	234 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	PAFAH1B3	Q15102	231 aa	Known RBP	6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	IFI16	Q16666	785 aa	Known RBP	6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	HES3	Q5TGS1	186 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	ZCCHC8	Q6NZY4	707 aa	Known RBP	6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	MACC1	Q6ZN28	852 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	DPPA4	Q7L190	304 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	GAS2L3	Q86XJ1	694 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	PROSER1	Q86XN7	944 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	CPNE8	Q86YQ8	564 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	PHACTR4	Q8IZ21	702 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	SDR16C5	Q8N3Y7	309 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	PGBD5	Q8N414	524 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	ATPAF2	Q8N5M1	289 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	TEX26	Q8N6G2	289 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	ATL2	Q8NHH9	583 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	PCDH19	Q8TAB3	1148 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	LMX1A	Q8TE12	382 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	PDCD6IP	Q8WUM4	868 aa	Known RBP	6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	SCG3	Q8WXD2	468 aa	Known RBP	6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	GLMN	Q92990	594 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	TBATA	Q96M53	351 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	TSGA13	Q96PP4	275 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	IL12RB2	Q99665	862 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	MGME1	Q9BQP7	344 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	ABCG4	Q9H172	646 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	NT5M	Q9NPB1	228 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	ABHD10	Q9NUJ1	306 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	DKK4	Q9UBT3	224 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	SALL4	Q9UJQ4	1053 aa		6.95	□□□□□ -1.3
SF3B3-209	ENST00000567635	ZFYVE26	Q68DK2	2539 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	PTPRQ	Q9UMZ3	2332 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	CACNA1G	O43497	2377 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	LY6G6E	A0A0G2JKS1	128 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	CPED1	A4D0V7	1026 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	LMO7DN	F2Z398	122 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	MATN3	O15232	486 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	YY2	O15391	372 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	OPA1	O60313	960 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	MFAP3L	O75121	409 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	RASGRP1	O95267	797 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	MT-CO3	P00414	261 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	TNF	P01375	233 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	PCCB	P05166	539 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	GP1BA	P07359	652 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	ANXA6	P08133	673 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	HOXC4	P09017	264 aa	Predicted RBP	6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	ALPI	P09923	528 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	MYF5	P13349	255 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	KRT10	P13645	584 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	CTSE	P14091	401 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	CCNB1	P14635	433 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	CCNC	P24863	283 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	TRIM23	P36406	574 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	GARS	P41250	739 aa	Known RBP	6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	RPIA	P49247	311 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	HK3	P52790	923 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	CLDN6	P56747	220 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	SRP54	P61011	504 aa	Known RBP	6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	INSM1	Q01101	510 aa	Predicted RBP	6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	GALNT2	Q10471	571 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	RALGDS	Q12967	914 aa		6.94	□□□□□ -1.3
SF3B3-209	ENST00000567635	TBX2	Q13207	712 aa	Predicted RBP	6.94	□□□□□ -1.3

Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms