RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 ARRB1P49407 418 aaPredicted RBP13.54□□□□□ -0.24
CLK3-218ENST00000566926 AP1S1P61966 158 aa13.54□□□□□ -0.24
CLK3-218ENST00000566926 POLR2LP62875 67 aaKnown RBP13.54□□□□□ -0.24
CLK3-218ENST00000566926 DR1Q01658 176 aa13.54□□□□□ -0.24
CLK3-218ENST00000566926 BCL2L1Q07817 233 aa13.54□□□□□ -0.24
CLK3-218ENST00000566926 INAVAQ3KP66 663 aa13.54□□□□□ -0.24
CLK3-218ENST00000566926 TMEM259Q4ZIN3 620 aa13.54□□□□□ -0.24
CLK3-218ENST00000566926 RALGPS1Q5JS13 557 aa13.54□□□□□ -0.24
CLK3-218ENST00000566926 MARC1Q5VT66 337 aa13.54□□□□□ -0.24
CLK3-218ENST00000566926 KAZNQ674X7 775 aa13.54□□□□□ -0.24
CLK3-218ENST00000566926 AADACL2Q6P093 401 aa13.54□□□□□ -0.24
CLK3-218ENST00000566926 ARHGAP36Q6ZRI8 547 aa13.54□□□□□ -0.24
CLK3-218ENST00000566926 RFX6Q8HWS3 928 aa13.54□□□□□ -0.24
CLK3-218ENST00000566926 DCP2Q8IU60 420 aaKnown RBP13.54□□□□□ -0.24
CLK3-218ENST00000566926 KLHL7Q8IXQ5 586 aa13.54□□□□□ -0.24
CLK3-218ENST00000566926 EIF1ADQ8N9N8 165 aaKnown RBP13.54□□□□□ -0.24
CLK3-218ENST00000566926 NETO2Q8NC67 525 aa13.54□□□□□ -0.24
CLK3-218ENST00000566926 LRRN4CLQ8ND94 238 aa13.54□□□□□ -0.24
CLK3-218ENST00000566926 DEFB124Q8NES8 71 aa13.54□□□□□ -0.24
CLK3-218ENST00000566926 PCDH19Q8TAB3 1148 aa13.54□□□□□ -0.24
CLK3-218ENST00000566926 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.54□□□□□ -0.24
CLK3-218ENST00000566926 HAUS1Q96CS2 278 aa13.54□□□□□ -0.24
CLK3-218ENST00000566926 ELF4Q99607 663 aaPredicted RBP13.54□□□□□ -0.24
CLK3-218ENST00000566926 C1QTNF7Q9BXJ2 289 aa13.54□□□□□ -0.24
CLK3-218ENST00000566926 DDX47Q9H0S4 455 aaKnown RBP13.54□□□□□ -0.24
CLK3-218ENST00000566926 ERVMER34-1Q9H9K5 563 aa13.54□□□□□ -0.24
CLK3-218ENST00000566926 ARGLU1Q9NWB6 273 aaPredicted RBP13.54□□□□□ -0.24
CLK3-218ENST00000566926 ZFR2Q9UPR6 939 aaKnown RBP13.54□□□□□ -0.24
CLK3-218ENST00000566926 HS3ST3A1Q9Y663 406 aa13.54□□□□□ -0.24
CLK3-218ENST00000566926 DNAH14Q0VDD8 3507 aa13.54□□□□□ -0.24
CLK3-218ENST00000566926 TSPAN11A1L157 253 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 AREL1O15033 823 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 INSIG1O15503 277 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 PCDHGA12O60330 932 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 ECEL1O95672 775 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 WNT1P04628 370 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 ADRB1P08588 477 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 KRT10P13645 584 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 NFKBIAP25963 317 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 COILP38432 576 aaPredicted RBP13.53□□□□□ -0.24
CLK3-218ENST00000566926 ABL2P42684 1182 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 SCNN1BP51168 640 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 NXPH1P58417 271 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 SLC10A7Q0GE19 358 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 GALNT2Q10471 571 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 SEL1L3Q68CR1 1132 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 NCBP2-AS2Q69YL0 99 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 ERAP2Q6P179 960 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 WDR93Q6P2C0 686 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 CCDC137Q6PK04 289 aaKnown RBP13.53□□□□□ -0.24
CLK3-218ENST00000566926 LAYNQ6UX15 382 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 NAXDQ8IW45 347 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 TP53INP2Q8IXH6 220 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 IFT20Q8IY31 132 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 TMEM145Q8NBT3 493 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 ATL2Q8NHH9 583 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 CXorf40AQ8TE69 158 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 SETD7Q8WTS6 366 aaKnown RBP13.53□□□□□ -0.24
CLK3-218ENST00000566926 P3H4Q92791 437 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 KLK6Q92876 244 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 LENG8Q96PV6 779 aaPredicted RBP13.53□□□□□ -0.24
CLK3-218ENST00000566926 FERMT1Q9BQL6 677 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 C1QTNF2Q9BXJ5 285 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 FAM129AQ9BZQ8 928 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 IL21RQ9HBE5 538 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 AMACRQ9UHK6 382 aa13.53□□□□□ -0.24
CLK3-218ENST00000566926 DRG1Q9Y295 367 aaKnown RBP13.53□□□□□ -0.24
CLK3-218ENST00000566926 FNDC3AQ9Y2H6 1198 aaKnown RBP13.53□□□□□ -0.24
CLK3-218ENST00000566926 UTP11Q9Y3A2 253 aaKnown RBP13.53□□□□□ -0.24
CLK3-218ENST00000566926 ARID1BQ8NFD5 2236 aaPredicted RBP13.52□□□□□ -0.24
CLK3-218ENST00000566926 A0A1B0GTQ1 180 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 TCRBV7S2A1N4TA0A589 114 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 MED19A0JLT2 244 aaPredicted RBP13.52□□□□□ -0.25
CLK3-218ENST00000566926 CFAP69A5D8W1 941 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 A6NNZ2 444 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 H0Y8X5 98 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 WNT9AO14904 365 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 LIASO43766 372 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 MFSD11O43934 449 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 SH3BP5O60239 455 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 SOCS5O75159 536 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 NEBLO76041 1014 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 TM7SF2O76062 418 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 PIGNO95427 931 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 PAK4O96013 591 aaPredicted RBP13.52□□□□□ -0.25
CLK3-218ENST00000566926 ITGAVP06756 1048 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 TIMP2P16035 220 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 CES1P23141 567 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 CCNCP24863 283 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 GARSP41250 739 aaKnown RBP13.52□□□□□ -0.25
CLK3-218ENST00000566926 MMP13P45452 471 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 XRCC4Q13426 336 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 CUL1Q13616 776 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 UGP2Q16851 508 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 DBX2Q6ZNG2 339 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 CAMK1DQ8IU85 385 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 DENND6BQ8NEG7 585 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 SLC35B2Q8TB61 432 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 FATE1Q969F0 183 aa13.52□□□□□ -0.25
CLK3-218ENST00000566926 VOPP1Q96AW1 172 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms