RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 OR1A2Q9Y585 309 aa17.22■□□□□ 0.35
CLN3-216ENST00000565316 LRRK1Q38SD2 2015 aa17.22■□□□□ 0.35
CLN3-216ENST00000565316 PMS2P1A4D2B8 440 aa17.21■□□□□ 0.35
CLN3-216ENST00000565316 LRRC53A6NM62 1247 aa17.21■□□□□ 0.35
CLN3-216ENST00000565316 TRAFD1O14545 582 aaPredicted RBP17.21■□□□□ 0.35
CLN3-216ENST00000565316 PRKCGP05129 697 aa17.21■□□□□ 0.35
CLN3-216ENST00000565316 HOXC4P09017 264 aaPredicted RBP17.21■□□□□ 0.35
CLN3-216ENST00000565316 CTSEP14091 401 aa17.21■□□□□ 0.35
CLN3-216ENST00000565316 MIPP30301 263 aa17.21■□□□□ 0.35
CLN3-216ENST00000565316 ANP32AP39687 249 aaKnown RBP17.21■□□□□ 0.35
CLN3-216ENST00000565316 KIAA1024LP59773 190 aa17.21■□□□□ 0.35
CLN3-216ENST00000565316 DPYSQ14117 519 aa17.21■□□□□ 0.35
CLN3-216ENST00000565316 SPIDRQ14159 915 aa17.21■□□□□ 0.35
CLN3-216ENST00000565316 KCTD16Q68DU8 428 aa17.21■□□□□ 0.35
CLN3-216ENST00000565316 ARHGAP36Q6ZRI8 547 aa17.21■□□□□ 0.35
CLN3-216ENST00000565316 ZNF571Q7Z3V5 609 aaPredicted RBP17.21■□□□□ 0.35
CLN3-216ENST00000565316 CLEC14AQ86T13 490 aa17.21■□□□□ 0.35
CLN3-216ENST00000565316 GKN2Q86XP6 184 aa17.21■□□□□ 0.35
CLN3-216ENST00000565316 PLA2G15Q8NCC3 412 aa17.21■□□□□ 0.35
CLN3-216ENST00000565316 WBP1Q96G27 269 aa17.21■□□□□ 0.35
CLN3-216ENST00000565316 LIN37Q96GY3 246 aaPredicted RBP17.21■□□□□ 0.35
CLN3-216ENST00000565316 NSMCE3Q96MG7 304 aa17.21■□□□□ 0.35
CLN3-216ENST00000565316 BPIFA3Q9BQP9 254 aa17.21■□□□□ 0.35
CLN3-216ENST00000565316 CINPQ9BW66 212 aaPredicted RBP17.21■□□□□ 0.35
CLN3-216ENST00000565316 GULP1Q9UBP9 304 aa17.21■□□□□ 0.35
CLN3-216ENST00000565316 KLQ9UEF7 1012 aa17.21■□□□□ 0.35
CLN3-216ENST00000565316 RABGEF1Q9UJ41 708 aa17.21■□□□□ 0.35
CLN3-216ENST00000565316 GPR34Q9UPC5 381 aa17.21■□□□□ 0.35
CLN3-216ENST00000565316 DOLKQ9UPQ8 538 aa17.21■□□□□ 0.35
CLN3-216ENST00000565316 FLNBO75369 2602 aaKnown RBP17.21■□□□□ 0.35
CLN3-216ENST00000565316 CCDC187A0A096LP49 1063 aa17.21■□□□□ 0.34
CLN3-216ENST00000565316 ERVH48-1M5A8F1 160 aa17.21■□□□□ 0.34
CLN3-216ENST00000565316 KLK10O43240 276 aa17.21■□□□□ 0.34
CLN3-216ENST00000565316 DAPK3O43293 454 aa17.21■□□□□ 0.34
CLN3-216ENST00000565316 PRPSAP2O60256 369 aa17.21■□□□□ 0.34
CLN3-216ENST00000565316 RNF8O76064 485 aa17.21■□□□□ 0.34
CLN3-216ENST00000565316 RECQL5O94762 991 aaPredicted RBP17.21■□□□□ 0.34
CLN3-216ENST00000565316 FTLP02792 175 aaPredicted RBP17.21■□□□□ 0.34
CLN3-216ENST00000565316 PCCBP05166 539 aa17.21■□□□□ 0.34
CLN3-216ENST00000565316 GM2AP17900 193 aa17.21■□□□□ 0.34
CLN3-216ENST00000565316 TRIM23P36406 574 aa17.21■□□□□ 0.34
CLN3-216ENST00000565316 PRKCIP41743 596 aa17.21■□□□□ 0.34
CLN3-216ENST00000565316 POLR2LP62875 67 aaKnown RBP17.21■□□□□ 0.34
CLN3-216ENST00000565316 RHDQ02161 417 aa17.21■□□□□ 0.34
CLN3-216ENST00000565316 BCL2L1Q07817 233 aa17.21■□□□□ 0.34
CLN3-216ENST00000565316 E4F1Q66K89 784 aaPredicted RBP17.21■□□□□ 0.34
CLN3-216ENST00000565316 OGFOD3Q6PK18 319 aa17.21■□□□□ 0.34
CLN3-216ENST00000565316 LIPIQ6XZB0 460 aa17.21■□□□□ 0.34
CLN3-216ENST00000565316 DPPA4Q7L190 304 aa17.21■□□□□ 0.34
CLN3-216ENST00000565316 RD3Q7Z3Z2 195 aa17.21■□□□□ 0.34
CLN3-216ENST00000565316 ARL14Q8N4G2 192 aa17.21■□□□□ 0.34
CLN3-216ENST00000565316 OR6C4Q8NGE1 309 aa17.21■□□□□ 0.34
CLN3-216ENST00000565316 FUBP1Q96AE4 644 aaKnown RBP17.21■□□□□ 0.34
CLN3-216ENST00000565316 CCDC74AQ96AQ1 378 aa17.21■□□□□ 0.34
CLN3-216ENST00000565316 PSKH2Q96QS6 385 aa17.21■□□□□ 0.34
CLN3-216ENST00000565316 HAUS4Q9H6D7 363 aa17.21■□□□□ 0.34
CLN3-216ENST00000565316 SP110Q9HB58 689 aa17.21■□□□□ 0.34
CLN3-216ENST00000565316 CPNE5Q9HCH3 593 aa17.21■□□□□ 0.34
CLN3-216ENST00000565316 CWC15Q9P013 229 aaKnown RBP17.21■□□□□ 0.34
CLN3-216ENST00000565316 GOLGA6L22H0YM25 854 aa17.2■□□□□ 0.34
CLN3-216ENST00000565316 DFFAO00273 331 aa17.2■□□□□ 0.34
CLN3-216ENST00000565316 DDX3XO00571 662 aaKnown RBP eCLIP17.2■□□□□ 0.345e-8■■□□□ 12.6
CLN3-216ENST00000565316 TNFRSF10CO14798 259 aa17.2■□□□□ 0.34
CLN3-216ENST00000565316 LRCH4O75427 683 aa17.2■□□□□ 0.34
CLN3-216ENST00000565316 MBD3O95983 291 aa17.2■□□□□ 0.34
CLN3-216ENST00000565316 TNFP01375 233 aa17.2■□□□□ 0.34
CLN3-216ENST00000565316 AP1S1P61966 158 aa17.2■□□□□ 0.34
CLN3-216ENST00000565316 ASIC2Q16515 512 aa17.2■□□□□ 0.34
CLN3-216ENST00000565316 PPP6R3Q5H9R7 873 aaPredicted RBP17.2■□□□□ 0.34
CLN3-216ENST00000565316 ZNF843Q8N446 348 aa17.2■□□□□ 0.34
CLN3-216ENST00000565316 LZTR1Q8N653 840 aa17.2■□□□□ 0.34
CLN3-216ENST00000565316 GPR156Q8NFN8 814 aa17.2■□□□□ 0.34
CLN3-216ENST00000565316 OR1E3Q8WZA6 343 aa17.2■□□□□ 0.34
CLN3-216ENST00000565316 CCDC97Q96F63 343 aaPredicted RBP17.2■□□□□ 0.34
CLN3-216ENST00000565316 PDXPQ96GD0 296 aa17.2■□□□□ 0.34
CLN3-216ENST00000565316 ZNF599Q96NL3 588 aa17.2■□□□□ 0.34
CLN3-216ENST00000565316 NAT10Q9H0A0 1025 aaKnown RBP17.2■□□□□ 0.34
CLN3-216ENST00000565316 SIRPGQ9P1W8 387 aa17.2■□□□□ 0.34
CLN3-216ENST00000565316 CNOT8Q9UFF9 292 aaKnown RBP17.2■□□□□ 0.34
CLN3-216ENST00000565316 SEPT3Q9UH03 358 aa17.2■□□□□ 0.34
CLN3-216ENST00000565316 LRP4O75096 1905 aa17.2■□□□□ 0.34
CLN3-216ENST00000565316 TENM4Q6N022 2769 aa17.19■□□□□ 0.34
CLN3-216ENST00000565316 PIEZO2Q9H5I5 2752 aa17.19■□□□□ 0.34
CLN3-216ENST00000565316 A0A1W2PQC6 194 aa17.19■□□□□ 0.34
CLN3-216ENST00000565316 TMEM202A6NGA9 273 aa17.19■□□□□ 0.34
CLN3-216ENST00000565316 TMX2-CTNND1H3BSU7 103 aa17.19■□□□□ 0.34
CLN3-216ENST00000565316 CACNB4O00305 520 aaPredicted RBP17.19■□□□□ 0.34
CLN3-216ENST00000565316 PEX11BO96011 259 aa17.19■□□□□ 0.34
CLN3-216ENST00000565316 ITGA2BP08514 1039 aa17.19■□□□□ 0.34
CLN3-216ENST00000565316 ELFN1P0C7U0 828 aa17.19■□□□□ 0.34
CLN3-216ENST00000565316 PCK1P35558 622 aa17.19■□□□□ 0.34
CLN3-216ENST00000565316 SCNN1BP51168 640 aa17.19■□□□□ 0.34
CLN3-216ENST00000565316 RENBPP51606 427 aa17.19■□□□□ 0.34
CLN3-216ENST00000565316 CCL7P80098 99 aa17.19■□□□□ 0.34
CLN3-216ENST00000565316 VAC14Q08AM6 782 aa17.19■□□□□ 0.34
CLN3-216ENST00000565316 ANO6Q4KMQ2 910 aa17.19■□□□□ 0.34
CLN3-216ENST00000565316 ARHGAP40Q5TG30 622 aa17.19■□□□□ 0.34
CLN3-216ENST00000565316 TMCO4Q5TGY1 634 aa17.19■□□□□ 0.34
CLN3-216ENST00000565316 B3GNT8Q7Z7M8 397 aa17.19■□□□□ 0.34
CLN3-216ENST00000565316 TP53INP2Q8IXH6 220 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms