RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 FZD6O60353 706 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 RECQL5O94762 991 aaPredicted RBP14.94□□□□□ -0.02
CLN3-213ENST00000565047 MT-CO3P00414 261 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 CELA2BP08218 269 aaPredicted RBP14.94□□□□□ -0.02
CLN3-213ENST00000565047 H2AFZP0C0S5 128 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 TMEM253P0C7T8 217 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 ALPPL2P10696 532 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 TSHRP16473 764 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 XPAP23025 273 aaPredicted RBP14.94□□□□□ -0.02
CLN3-213ENST00000565047 HNF1BP35680 557 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 HK3P52790 923 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 THOP1P52888 689 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 POLR2LP62875 67 aaKnown RBP14.94□□□□□ -0.02
CLN3-213ENST00000565047 TRAF2Q12933 501 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 MTM1Q13496 603 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 C1orf61Q13536 156 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 ALG11Q2TAA5 492 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 DEFB133Q30KQ1 61 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 ANKRD20A8PQ5CZ79 823 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 RALGPS1Q5JS13 557 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 ALG1LQ6GMV1 187 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 H2AFVQ71UI9 128 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 LRRC49Q8IUZ0 686 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 PQLC3Q8N755 202 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 LMX1AQ8TE12 382 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 COQ10AQ96MF6 247 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 ZNF670Q9BS34 389 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 ABHD10Q9NUJ1 306 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 SPASTQ9UBP0 616 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 APOBEC3BQ9UH17 382 aaKnown RBP14.94□□□□□ -0.02
CLN3-213ENST00000565047 CLCA2Q9UQC9 943 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 OR1A2Q9Y585 309 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 LOC400499M0QZD8 3231 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 LRP4O75096 1905 aa14.94□□□□□ -0.02
CLN3-213ENST00000565047 A0A087WV48 116 aa14.93□□□□□ -0.02
CLN3-213ENST00000565047 HOXC4P09017 264 aaPredicted RBP14.93□□□□□ -0.02
CLN3-213ENST00000565047 LHCGRP22888 699 aa14.93□□□□□ -0.02
CLN3-213ENST00000565047 MAN1A1P33908 653 aa14.93□□□□□ -0.02
CLN3-213ENST00000565047 SERPINB6P35237 376 aa14.93□□□□□ -0.02
CLN3-213ENST00000565047 GARSP41250 739 aaKnown RBP14.93□□□□□ -0.02
CLN3-213ENST00000565047 ADKP55263 362 aaKnown RBP14.93□□□□□ -0.02
CLN3-213ENST00000565047 MAXP61244 160 aa14.93□□□□□ -0.02
CLN3-213ENST00000565047 DAB2P98082 770 aa14.93□□□□□ -0.02
CLN3-213ENST00000565047 PPARDQ03181 441 aa14.93□□□□□ -0.02
CLN3-213ENST00000565047 SLC10A2Q12908 348 aaPredicted RBP14.93□□□□□ -0.02
CLN3-213ENST00000565047 TBX2Q13207 712 aaPredicted RBP14.93□□□□□ -0.02
CLN3-213ENST00000565047 TRIM14Q14142 442 aa14.93□□□□□ -0.02
CLN3-213ENST00000565047 NFATC4Q14934 902 aa14.93□□□□□ -0.02
CLN3-213ENST00000565047 PTPRRQ15256 657 aa14.93□□□□□ -0.02
CLN3-213ENST00000565047 HADHQ16836 314 aaKnown RBP14.93□□□□□ -0.02
CLN3-213ENST00000565047 PRRT3Q5FWE3 981 aa14.93□□□□□ -0.02
CLN3-213ENST00000565047 C6orf132Q5T0Z8 1188 aa14.93□□□□□ -0.02
CLN3-213ENST00000565047 MARC1Q5VT66 337 aa14.93□□□□□ -0.02
CLN3-213ENST00000565047 GUSBP11Q6P575 273 aa14.93□□□□□ -0.02
CLN3-213ENST00000565047 PIH1D2Q8WWB5 315 aa14.93□□□□□ -0.02
CLN3-213ENST00000565047 TSACCQ96A04 125 aaPredicted RBP14.93□□□□□ -0.02
CLN3-213ENST00000565047 TSGA13Q96PP4 275 aa14.93□□□□□ -0.02
CLN3-213ENST00000565047 MCCC1Q96RQ3 725 aaPredicted RBP14.93□□□□□ -0.02
CLN3-213ENST00000565047 CTTNBP2NLQ9P2B4 639 aa14.93□□□□□ -0.02
CLN3-213ENST00000565047 B4GALT6Q9UBX8 382 aa14.93□□□□□ -0.02
CLN3-213ENST00000565047 SMG1Q96Q15 3661 aaKnown RBP14.92□□□□□ -0.02
CLN3-213ENST00000565047 A0A1W2PQ67 120 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 TMEM202A6NGA9 273 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 C3orf70A6NLC5 250 aaPredicted RBP14.92□□□□□ -0.02
CLN3-213ENST00000565047 CASC3O15234 703 aaKnown RBP14.92□□□□□ -0.02
CLN3-213ENST00000565047 CBFA2T2O43439 604 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 TLX3O43711 291 aaPredicted RBP14.92□□□□□ -0.02
CLN3-213ENST00000565047 MFAP3LO75121 409 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 MTA2O94776 668 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 PGLSO95336 258 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 TPM3P06753 285 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 ELFN1P0C7U0 828 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 TGM2P21980 687 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 MMP13P45452 471 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 KIAA1024LP59773 190 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 KRT81Q14533 505 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 ZNF235Q14590 738 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 PDK2Q15119 407 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 CNGA3Q16281 694 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 CDKN3Q16667 212 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 HS1BP3Q53T59 392 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 PERM1Q5SV97 790 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 CFAP58Q5T655 872 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 FAXCQ5TGI0 409 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 ENPP7Q6UWV6 458 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 SLC35F3Q8IY50 421 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 ATPAF2Q8N5M1 289 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 IFI44Q8TCB0 444 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 CTNNBL1Q8WYA6 563 aaPredicted RBP14.92□□□□□ -0.02
CLN3-213ENST00000565047 RAPGEF5Q92565 580 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 SCRN2Q96FV2 425 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 LGR4Q9BXB1 951 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 SLC13A1Q9BZW2 595 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 TSPY26PQ9H489 355 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 SCUBE2Q9NQ36 999 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 DGKBQ9Y6T7 804 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 ZFYVE26Q68DK2 2539 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 ACACAQ13085 2346 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 ASXL3Q9C0F0 2248 aa14.92□□□□□ -0.02
CLN3-213ENST00000565047 A8MX80 341 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms