RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 ERVK-10P10266 1014 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 HNRNPLP14866 589 aaKnown RBP eCLIP10.35□□□□□ -0.753e-6■■■□□ 15.1
USP3-219ENST00000561326 XPAP23025 273 aaPredicted RBP10.35□□□□□ -0.75
USP3-219ENST00000561326 OAS2P29728 719 aaKnown RBP10.35□□□□□ -0.75
USP3-219ENST00000561326 HADHAP40939 763 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 ABL2P42684 1182 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 MSLNQ13421 630 aaPredicted RBP10.35□□□□□ -0.75
USP3-219ENST00000561326 TMED2Q15363 201 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 QPCTQ16769 361 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 PTPRNQ16849 979 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 UGP2Q16851 508 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 HNRNPA1L2Q32P51 320 aaKnown RBP10.35□□□□□ -0.75
USP3-219ENST00000561326 GRTP1Q5TC63 336 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 KCTD16Q68DU8 428 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 KIAA0930Q6ICG6 404 aaPredicted RBP10.35□□□□□ -0.75
USP3-219ENST00000561326 SDE2Q6IQ49 451 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 PTCRAQ6ISU1 281 aaPredicted RBP10.35□□□□□ -0.75
USP3-219ENST00000561326 ESRP1Q6NXG1 681 aaKnown RBP10.35□□□□□ -0.75
USP3-219ENST00000561326 TRMT10BQ6PF06 316 aaKnown RBP10.35□□□□□ -0.75
USP3-219ENST00000561326 BRAT1Q6PJG6 821 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 USP45Q70EL2 814 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 MARK2Q7KZI7 788 aaKnown RBP10.35□□□□□ -0.75
USP3-219ENST00000561326 GLT6D1Q7Z4J2 308 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 KCNMB4Q86W47 210 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 OR6P1Q8NGX9 317 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 KCNV2Q8TDN2 545 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 PIH1D2Q8WWB5 315 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 OR8D1Q8WZ84 308 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 DNASE1L2Q92874 299 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 MTBPQ96DY7 904 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 NSMCE3Q96MG7 304 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 CPNE1Q99829 537 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 C19orf43Q9BQ61 176 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 FAM167BQ9BTA0 163 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 DHRS4Q9BTZ2 278 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 GPR63Q9BZJ6 419 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 TREX1Q9NSU2 369 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 THAP10Q9P2Z0 257 aaPredicted RBP10.35□□□□□ -0.75
USP3-219ENST00000561326 STARD13Q9Y3M8 1113 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 PKP3Q9Y446 797 aa10.35□□□□□ -0.75
USP3-219ENST00000561326 CKAP5Q14008 2032 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 A0A0J9YYE9 177 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 CCDC78A2IDD5 438 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 SPECC1L-ADORA2AF8WAN1 911 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 H3BQF6 201 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 PFDN6O15212 129 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 PIGNO95427 931 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 TRBC1P01850 177 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 MT-ND3P03897 115 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 PIRTP0C851 137 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 SLC8A1P32418 973 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 SPRP35270 261 aaPredicted RBP10.34□□□□□ -0.75
USP3-219ENST00000561326 MAGOHP61326 146 aaKnown RBP10.34□□□□□ -0.75
USP3-219ENST00000561326 DNAJC3Q13217 504 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 ZNF234Q14588 700 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 HSP90AA5PQ58FG0 334 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 TTMPQ5BVD1 217 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 ZNF805Q5CZA5 627 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 ARSIQ5FYB1 569 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 TEDDM1Q5T9Z0 273 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 NEPROQ6NW34 567 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 SDCCAG8Q86SQ7 713 aaPredicted RBP10.34□□□□□ -0.75
USP3-219ENST00000561326 TMIEQ8NEW7 156 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 FAM76AQ8TAV0 307 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 DCAKDQ8WVC6 231 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 PTPRN2Q92932 1015 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 HDAC10Q969S8 669 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 ECHDC3Q96DC8 303 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 CHFRQ96EP1 664 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 MSANTD3Q96H12 275 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 ZNF778Q96MU6 729 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 KLHL32Q96NJ5 620 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 TRIM56Q9BRZ2 755 aaKnown RBP10.34□□□□□ -0.75
USP3-219ENST00000561326 TMEM245Q9H330 911 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 PLAC1Q9HBJ0 212 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 NLE1Q9NVX2 485 aaPredicted RBP10.34□□□□□ -0.75
USP3-219ENST00000561326 DKK3Q9UBP4 350 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 PPIL1Q9Y3C6 166 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 PIKFYVEQ9Y2I7 2098 aa10.34□□□□□ -0.75
USP3-219ENST00000561326 CDH23Q9H251 3354 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 CXorf49A8MYA2 514 aaPredicted RBP10.33□□□□□ -0.76
USP3-219ENST00000561326 POLR3GO15318 223 aaPredicted RBP10.33□□□□□ -0.76
USP3-219ENST00000561326 RNASEH1O60930 286 aaKnown RBP10.33□□□□□ -0.76
USP3-219ENST00000561326 LEFTY1O75610 366 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 RPP40O75818 363 aaKnown RBP10.33□□□□□ -0.76
USP3-219ENST00000561326 C1QAP02745 245 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 EPHX1P07099 455 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 CYP2A6P11509 494 aaPredicted RBP10.33□□□□□ -0.76
USP3-219ENST00000561326 CTPS1P17812 591 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 DRD1P21728 446 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 GCAP28676 217 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 GKP32189 559 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 CTHP32929 405 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 HMGCLP35914 325 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 GP5P40197 560 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 SUOXP51687 545 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 PTPN5P54829 565 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 CSE1LP55060 971 aaKnown RBP10.33□□□□□ -0.76
USP3-219ENST00000561326 ACVR1Q04771 509 aa10.33□□□□□ -0.76
USP3-219ENST00000561326 GRSF1Q12849 480 aaKnown RBP eCLIP10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms