RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	TCP11X1	B4DZS4	312 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858		E7ENQ6	273 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	IPO5	O00410	1097 aa	Known RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	TRAFD1	O14545	582 aa	Predicted RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	DNALI1	O14645	258 aa	Predicted RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	NDC80	O14777	642 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	MAGEB2	O15479	319 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	CLDN3	O15551	220 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	THAP12	O43422	761 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	CHMP2A	O43633	222 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	SPOP	O43791	374 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	ZBED4	O75132	1171 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	PEX11A	O75192	247 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	RFPL3	O75679	317 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	PROSC	O94903	275 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	UNC5C	O95185	931 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	ACSL3	O95573	720 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	ASMTL	O95671	621 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	GH1	P01241	217 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	GH2	P01242	217 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	IL1B	P01584	269 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	PIGR	P01833	764 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	ICAM1	P05362	532 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	VIM	P08670	466 aa	Known RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	KRT16	P08779	473 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	FAM90A13P	P0C7W8	464 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	FAM90A24P	P0C7X0	464 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	POLR2M	P0CAP2	368 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	NHLRC4	P0CG21	123 aa	Predicted RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	AR	P10275	920 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	CETP	P11597	493 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	CYP11B1	P15538	503 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	CREB1	P16220	341 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	TAC1	P20366	129 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	RRM1	P23921	792 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	CCND1	P24385	295 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	KLRC2	P26717	231 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	GCA	P28676	217 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	MSH2	P43246	934 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	SLCO1A2	P46721	670 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	KCNJ1	P48048	391 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	LSS	P48449	732 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	GCLM	P48507	274 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	KCNJ5	P48544	419 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	IFNAR2	P48551	515 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	JAK3	P52333	1124 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	ITGA8	P53708	1063 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	CLNS1A	P54105	237 aa	Known RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	CACNB3	P54284	484 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	IL2	P60568	153 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	SNAP25	P60880	206 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	PIGF	Q07326	219 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	MCL1	Q07820	350 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	CYP24A1	Q07973	514 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	CETN1	Q12798	172 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	MYO1E	Q12965	1108 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	BLMH	Q13867	455 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	MESD	Q14696	234 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	STAT4	Q14765	748 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	PWP2	Q15269	919 aa	Known RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	PPP1R7	Q15435	360 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	ZKSCAN8	Q15776	578 aa	Predicted RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	SEPT7	Q16181	437 aa	Known RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	SNRNP35	Q16560	246 aa	Known RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	CCNG2	Q16589	344 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	PDK4	Q16654	411 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	FSCN1	Q16658	493 aa	Known RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	UGCG	Q16739	394 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	LONRF1	Q17RB8	773 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	ACCSL	Q4AC99	568 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	CCDC38	Q502W7	563 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	FAM133B	Q5BKY9	247 aa	Known RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	FAM91A1	Q658Y4	838 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	KRT39	Q6A163	491 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	PLEKHA7	Q6IQ23	1121 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	ACAD10	Q6JQN1	1059 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	PPP1R2P3	Q6NXS1	205 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	SLC30A10	Q6XR72	485 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	PPP1R21	Q6ZMI0	780 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	TRIM72	Q6ZMU5	477 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	ZNF551	Q7Z340	670 aa	Predicted RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	MIER3	Q7Z3K6	550 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	HAUS6	Q7Z4H7	955 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	TRABD2A	Q86V40	505 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	SLC47A2	Q86VL8	602 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	CEP57	Q86XR8	500 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	ECHDC2	Q86YB7	292 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	PHF13	Q86YI8	300 aa	Predicted RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	CBWD2	Q8IUF1	395 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	TPH2	Q8IWU9	490 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	C4orf19	Q8IY42	314 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	CCDC105	Q8IYK2	499 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	KATNAL2	Q8IYT4	538 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	MCOLN2	Q8IZK6	566 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	SYCP3	Q8IZU3	236 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	ZCCHC9	Q8N567	271 aa	Known RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	RBMXL3	Q8N7X1	1067 aa	Known RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	UBR7	Q8N806	425 aa		2.56	□□□□□ -2
SPG11-223	ENST00000560858	ENDOV	Q8N8Q3	282 aa	Known RBP	2.56	□□□□□ -2
SPG11-223	ENST00000560858	NRAC	Q8N912	160 aa		2.56	□□□□□ -2

Retrieved 100 of 20,778 RNA–protein pairs in 29 ms