RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 UGP2Q16851 508 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 MAP7D1Q3KQU3 841 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 TMTC4Q5T4D3 741 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 NADSYN1Q6IA69 706 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 CROCCP2Q86T23 111 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 SRLQ86TD4 932 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 HID1Q8IV36 788 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 NIPA2Q8N8Q9 360 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 SNX31Q8N9S9 440 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 LEMD2Q8NC56 503 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 OR2AP1Q8NGE2 309 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 CALML6Q8TD86 181 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 ELMO1Q92556 727 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 CERS2Q96G23 380 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 ATP6V1G3Q96LB4 118 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 FOPNLQ96NB1 174 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 TRIM54Q9BYV2 358 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 PITPNM3Q9BZ71 974 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 CAPN10Q9HC96 672 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 CATSPERZQ9NTU4 200 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 IMP3Q9NV31 184 aaKnown RBP5.47□□□□□ -1.53
VPS13C-209ENST00000560637 WWOXQ9NZC7 414 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 FNIP2Q9P278 1114 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 PCYOX1Q9UHG3 505 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 FBXO5Q9UKT4 447 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 USP3Q9Y6I4 520 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 FOCADQ5VW36 1801 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 TCRBV21S2A2A0A5A6 115 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 BTN3A1O00481 513 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 CFLARO15519 480 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 PRPF4O43172 522 aaKnown RBP eCLIP5.47□□□□□ -1.53
VPS13C-209ENST00000560637 CTIFO43310 598 aaKnown RBP5.47□□□□□ -1.53
VPS13C-209ENST00000560637 SASH3O75995 380 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 RASGRP1O95267 797 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 POP4O95707 220 aaKnown RBP5.47□□□□□ -1.53
VPS13C-209ENST00000560637 ESRRBO95718 433 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 NDST3O95803 873 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 DCNP07585 359 aaKnown RBP5.47□□□□□ -1.53
VPS13C-209ENST00000560637 HOXB8P17481 243 aaPredicted RBP5.47□□□□□ -1.53
VPS13C-209ENST00000560637 TAC1P20366 129 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 RPL10P27635 214 aaKnown RBP5.47□□□□□ -1.53
VPS13C-209ENST00000560637 CREB5Q02930 508 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 PPM1JQ5JR12 505 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 PCID2Q5JVF3 399 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 C22orf39Q6P5X5 142 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 RASGEF1CQ8N431 466 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 RPLP0P6Q8NHW5 317 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 SLC35B2Q8TB61 432 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 NKD2Q969F2 451 aaPredicted RBP5.47□□□□□ -1.53
VPS13C-209ENST00000560637 TMEM159Q96B96 161 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 OXNAD1Q96HP4 312 aaPredicted RBP5.47□□□□□ -1.53
VPS13C-209ENST00000560637 NECAB3Q96P71 396 aaPredicted RBP5.47□□□□□ -1.53
VPS13C-209ENST00000560637 GTPBP2Q9BX10 602 aaKnown RBP5.47□□□□□ -1.53
VPS13C-209ENST00000560637 SUV39H2Q9H5I1 410 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 LRRC4CQ9HCJ2 640 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 MED4Q9NPJ6 270 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 DRG1Q9Y295 367 aaKnown RBP5.47□□□□□ -1.53
VPS13C-209ENST00000560637 STK38LQ9Y2H1 464 aa5.47□□□□□ -1.53
VPS13C-209ENST00000560637 GREB1LQ9C091 1923 aaPredicted RBP5.47□□□□□ -1.53
VPS13C-209ENST00000560637 ZFHX2Q9C0A1 2572 aaPredicted RBP5.47□□□□□ -1.53
VPS13C-209ENST00000560637 A0A096LPK6 155 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 A0A1W2PPM1 405 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 A0A1W2PQ67 120 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 FAM170BA6NMN3 283 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 TCP11X1B4DZS4 312 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 SIN3BO75182 1162 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 CYP2A6P11509 494 aaPredicted RBP5.46□□□□□ -1.53
VPS13C-209ENST00000560637 RGRP47804 291 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 ARL4DP49703 201 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 RGS4P49798 205 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 AIF1P55008 147 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 PPP2R2AP63151 447 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 SULT2A1Q06520 285 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 SFSWAPQ12872 951 aaKnown RBP5.46□□□□□ -1.53
VPS13C-209ENST00000560637 SERINC3Q13530 473 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 IMPG1Q17R60 797 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 KIF19Q2TAC6 998 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 MSS51Q4VC12 460 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 FAM133BQ5BKY9 247 aaKnown RBP5.46□□□□□ -1.53
VPS13C-209ENST00000560637 CARD16Q5EG05 197 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 PPP1R15BQ5SWA1 713 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 FAM46CQ5VWP2 391 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 ANKRD54Q6NXT1 300 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 SCIMPQ6UWF3 145 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 CCDC121Q6ZUS5 278 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 SLC26A11Q86WA9 606 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 ZCCHC9Q8N567 271 aaKnown RBP5.46□□□□□ -1.53
VPS13C-209ENST00000560637 OR10G6Q8NH81 332 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 MAFAQ8NHW3 353 aaPredicted RBP5.46□□□□□ -1.53
VPS13C-209ENST00000560637 RFWD2Q8NHY2 731 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 FAM3CQ92520 227 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 CD101Q93033 1021 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 ACDQ96AP0 544 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 ZNF689Q96CS4 500 aaPredicted RBP5.46□□□□□ -1.53
VPS13C-209ENST00000560637 FEM1CQ96JP0 617 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 MAGEB10Q96LZ2 347 aaPredicted RBP5.46□□□□□ -1.53
VPS13C-209ENST00000560637 CDX2Q99626 313 aaPredicted RBP5.46□□□□□ -1.53
VPS13C-209ENST00000560637 FOXQ1Q9C009 403 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 IL22Q9GZX6 179 aa5.46□□□□□ -1.53
VPS13C-209ENST00000560637 SLC25A51Q9H1U9 297 aa5.46□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms