RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 MTSS1LQ765P7 747 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 CLEC14AQ86T13 490 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 SREK1Q8WXA9 508 aaKnown RBP17.9■□□□□ 0.46
SNX1-208ENST00000559844 LRRC3BQ96PB8 259 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 KCNK13Q9HB14 408 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 COPG2Q9UBF2 871 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 TLK1Q9UKI8 766 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 MYOFQ9NZM1 2061 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 KIF26AQ9ULI4 1882 aaPredicted RBP17.9■□□□□ 0.46
SNX1-208ENST00000559844 LOC285095A0A1B0GVY8 99 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 HEPACAM2A8MVW5 462 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 GOLGA8TH3BQL2 631 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 GREM1O60565 184 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 DNAJC6O75061 913 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 SERPINE1P05121 402 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 C2P06681 752 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 TCF3P15923 654 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 ETFBP38117 255 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 CNGA3Q16281 694 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 TSTD2Q5T7W7 516 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 FBXW10Q5XX13 1052 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 IL31Q6EBC2 164 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 KIAA0408Q6ZU52 694 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 C2CD4AQ8NCU7 369 aaPredicted RBP17.9■□□□□ 0.46
SNX1-208ENST00000559844 BPIFB1Q8TDL5 484 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 KLHL29Q96CT2 875 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 IFT43Q96FT9 208 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 FEM1CQ96JP0 617 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 TUBB6Q9BUF5 446 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 SAR1AQ9NR31 198 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 SLC39A10Q9ULF5 831 aa17.9■□□□□ 0.46
SNX1-208ENST00000559844 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP17.89■□□□□ 0.45
SNX1-208ENST00000559844 E2F8A0AVK6 867 aa17.89■□□□□ 0.45
SNX1-208ENST00000559844 ILVBLA1L0T0 632 aa17.89■□□□□ 0.45
SNX1-208ENST00000559844 KDELR3O43731 214 aa17.89■□□□□ 0.45
SNX1-208ENST00000559844 LATS1O95835 1130 aa17.89■□□□□ 0.45
SNX1-208ENST00000559844 AHSGP02765 367 aa17.89■□□□□ 0.45
SNX1-208ENST00000559844 PRKCGP05129 697 aa17.89■□□□□ 0.45
SNX1-208ENST00000559844 ATP5BP06576 529 aaKnown RBP17.89■□□□□ 0.45
SNX1-208ENST00000559844 FGF3P11487 239 aaPredicted RBP17.89■□□□□ 0.45
SNX1-208ENST00000559844 COL6A2P12110 1019 aa17.89■□□□□ 0.45
SNX1-208ENST00000559844 CPA3P15088 417 aa17.89■□□□□ 0.45
SNX1-208ENST00000559844 HLA-DPA1P20036 260 aa17.89■□□□□ 0.45
SNX1-208ENST00000559844 ARNTP27540 789 aa17.89■□□□□ 0.45
SNX1-208ENST00000559844 CSRP3P50461 194 aa17.89■□□□□ 0.45
SNX1-208ENST00000559844 ZNF177Q13360 481 aaPredicted RBP17.89■□□□□ 0.45
SNX1-208ENST00000559844 USP10Q14694 798 aaKnown RBP17.89■□□□□ 0.45
SNX1-208ENST00000559844 RFTN1Q14699 578 aaPredicted RBP17.89■□□□□ 0.45
SNX1-208ENST00000559844 ALG1LQ6GMV1 187 aa17.89■□□□□ 0.45
SNX1-208ENST00000559844 VITQ6UXI7 678 aa17.89■□□□□ 0.45
SNX1-208ENST00000559844 RAPH1Q70E73 1250 aa17.89■□□□□ 0.45
SNX1-208ENST00000559844 SETD3Q86TU7 594 aaPredicted RBP17.89■□□□□ 0.45
SNX1-208ENST00000559844 PLCD3Q8N3E9 789 aa17.89■□□□□ 0.45
SNX1-208ENST00000559844 ELSPBP1Q96BH3 223 aa17.89■□□□□ 0.45
SNX1-208ENST00000559844 SEMA3CQ99985 751 aa17.89■□□□□ 0.45
SNX1-208ENST00000559844 OBP2AQ9NY56 170 aa17.89■□□□□ 0.45
SNX1-208ENST00000559844 SLC2A6Q9UGQ3 507 aa17.89■□□□□ 0.45
SNX1-208ENST00000559844 SEPT3Q9UH03 358 aa17.89■□□□□ 0.45
SNX1-208ENST00000559844 AGO1Q9UL18 857 aaKnown RBP17.89■□□□□ 0.45
SNX1-208ENST00000559844 NUMBLQ9Y6R0 609 aa17.89■□□□□ 0.45
SNX1-208ENST00000559844 A0A1B0GVM2 712 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 TCAF2A6NFQ2 919 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 HNRNPCL1O60812 293 aaKnown RBP17.88■□□□□ 0.45
SNX1-208ENST00000559844 EPOP01588 193 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 RHOCP08134 193 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 HOXD9P28356 352 aaPredicted RBP17.88■□□□□ 0.45
SNX1-208ENST00000559844 OXCT1P55809 520 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 ILF2Q12905 390 aaKnown RBP17.88■□□□□ 0.45
SNX1-208ENST00000559844 HTR4Q13639 388 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 ADGRF1Q5T601 910 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 NEPROQ6NW34 567 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 Q6ZNB5 142 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 HTR3DQ70Z44 454 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 BBS7Q8IWZ6 715 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 RDH11Q8TC12 318 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 PRICKLE1Q96MT3 831 aaPredicted RBP17.88■□□□□ 0.45
SNX1-208ENST00000559844 RPP25Q9BUL9 199 aaKnown RBP17.88■□□□□ 0.45
SNX1-208ENST00000559844 CAB39LQ9H9S4 337 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 HEY2Q9UBP5 337 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 UBA2Q9UBT2 640 aaPredicted RBP17.88■□□□□ 0.45
SNX1-208ENST00000559844 ANHXE9PGG2 379 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 H2AFYO75367 372 aaKnown RBP17.88■□□□□ 0.45
SNX1-208ENST00000559844 ECI2O75521 394 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 FGF1P05230 155 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 MYL2P10916 166 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 NQO1P15559 274 aaKnown RBP17.88■□□□□ 0.45
SNX1-208ENST00000559844 ABCG1P45844 678 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 CD151P48509 253 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 RASSF2P50749 326 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 ZBTB16Q05516 673 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 MSLNQ13421 630 aaPredicted RBP17.88■□□□□ 0.45
SNX1-208ENST00000559844 SLC12A1Q13621 1099 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 GRM2Q14416 872 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 SIRPB2Q5JXA9 342 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 ASRGL1Q7L266 308 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 MTDHQ86UE4 582 aaKnown RBP17.88■□□□□ 0.45
SNX1-208ENST00000559844 PACS2Q86VP3 889 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 C10orf107Q8IVU9 208 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 LMNTD2Q8IXW0 634 aa17.88■□□□□ 0.45
SNX1-208ENST00000559844 PLA2G2FQ9BZM2 168 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms