RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 CEP128Q6ZU80 1094 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 PARS2Q7L3T8 475 aaKnown RBP9.28□□□□□ -0.92
LDLR-210ENST00000559340 HOOK3Q86VS8 718 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 CACUL1Q86Y37 369 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 TBC1D3Q8IZP1 549 aaPredicted RBP9.28□□□□□ -0.92
LDLR-210ENST00000559340 AADATQ8N5Z0 425 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 DNAAF3Q8N9W5 541 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 MCUQ8NE86 351 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 CXorf40AQ8TE69 158 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 PIH1D2Q8WWB5 315 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 FOXJ1Q92949 421 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 FAM131CQ96AQ9 280 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 SNF8Q96H20 258 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 OXNAD1Q96HP4 312 aaPredicted RBP9.28□□□□□ -0.92
LDLR-210ENST00000559340 ZNF419Q96HQ0 510 aaPredicted RBP9.28□□□□□ -0.92
LDLR-210ENST00000559340 MRGPRX2Q96LB1 330 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 C1QTNF7Q9BXJ2 289 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 TPSD1Q9BZJ3 242 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 ARNT2Q9HBZ2 717 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 MAGEE1Q9HCI5 957 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 XAB2Q9HCS7 855 aaKnown RBP9.28□□□□□ -0.92
LDLR-210ENST00000559340 FAM86C1Q9NVL1 165 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 POLR3BQ9NW08 1133 aaPredicted RBP9.28□□□□□ -0.92
LDLR-210ENST00000559340 C2orf42Q9NWW7 574 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 WSB2Q9NYS7 404 aaPredicted RBP9.28□□□□□ -0.92
LDLR-210ENST00000559340 BFARQ9NZS9 450 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 CYP8B1Q9UNU6 501 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 NEU2Q9Y3R4 380 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 PCDHGA2Q9Y5H1 932 aa9.28□□□□□ -0.92
LDLR-210ENST00000559340 RGSL1A5PLK6 1076 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 C2orf81A6NN90 581 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 F5H423 210 aaPredicted RBP9.27□□□□□ -0.93
LDLR-210ENST00000559340 H0Y858 1186 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 PSMD11O00231 422 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 AREL1O15033 823 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 RAD51CO43502 376 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 LZTS3O60299 673 aaPredicted RBP9.27□□□□□ -0.93
LDLR-210ENST00000559340 RPP40O75818 363 aaKnown RBP9.27□□□□□ -0.93
LDLR-210ENST00000559340 RHOBTB1O94844 696 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 CRTAMO95727 393 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 AGTP01019 485 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 PRLP01236 227 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 PDHA1P08559 390 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 SP9P0CG40 484 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 MLNP12872 115 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 TDGF1P13385 188 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 ADRA1AP35348 466 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 DPP6P42658 865 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 PXNP49023 591 aaPredicted RBP9.27□□□□□ -0.93
LDLR-210ENST00000559340 CCR5P51681 352 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 SGCGQ13326 291 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 MORF4L2Q15014 288 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 QPCTQ16769 361 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 MAP7D1Q3KQU3 841 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 SIRPB2Q5JXA9 342 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 SYCP2LQ5T4T6 812 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 PIP5KL1Q5T9C9 394 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 FAXCQ5TGI0 409 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 AGBL4Q5VU57 503 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 IZUMO3Q5VZ72 239 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 ZDHHC20Q5W0Z9 365 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 TSSK4Q6SA08 328 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 CEP68Q76N32 757 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 DPPA4Q7L190 304 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 LPCAT2Q7L5N7 544 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 KDELC2Q7Z4H8 507 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 FAM124AQ86V42 546 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 TAB3Q8N5C8 712 aaPredicted RBP9.27□□□□□ -0.93
LDLR-210ENST00000559340 SLC25A41Q8N5S1 370 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 GLIS1Q8NBF1 620 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 CADM4Q8NFZ8 388 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 GAB3Q8WWW8 586 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 ASB12Q8WXK4 309 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 TOE1Q96GM8 510 aaKnown RBP9.27□□□□□ -0.93
LDLR-210ENST00000559340 MCCC1Q96RQ3 725 aaPredicted RBP9.27□□□□□ -0.93
LDLR-210ENST00000559340 TRIB3Q96RU7 358 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 LYSMD1Q96S90 227 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 GPR63Q9BZJ6 419 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 FAM129AQ9BZQ8 928 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 SLC6A17Q9H1V8 727 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 PCDH12Q9NPG4 1184 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 FAM114A2Q9NRY5 505 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.27□□□□□ -0.93
LDLR-210ENST00000559340 WHRNQ9P202 907 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 ANAPC5Q9UJX4 755 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 FADS3Q9Y5Q0 445 aa9.27□□□□□ -0.93
LDLR-210ENST00000559340 KNL1Q8NG31 2342 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 PLXNA2O75051 1894 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 IGHV1OR15-9A0A0B4J2B8 117 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 MAGEB16A2A368 324 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 CAPN8A6NHC0 703 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 FAM47DPA6NHR8 397 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 RNGTTO60942 597 aaKnown RBP9.26□□□□□ -0.93
LDLR-210ENST00000559340 PPFIA2O75334 1257 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 GJB3O75712 270 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 TM7SF2O76062 418 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 SLU7O95391 586 aaKnown RBP9.26□□□□□ -0.93
LDLR-210ENST00000559340 ELFN1P0C7U0 828 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 CTPS1P17812 591 aa9.26□□□□□ -0.93
LDLR-210ENST00000559340 HNF1BP35680 557 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms