RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 FAM193AP78312 1265 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 SEMG2Q02383 582 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 ZBTB16Q05516 673 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 CUL1Q13616 776 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 HLTFQ14527 1009 aaKnown RBP eCLIP9.66□□□□□ -0.86
CUX1-216ENST00000558469 PTPRRQ15256 657 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 QPCTQ16769 361 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 UGP2Q16851 508 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 TTC31Q49AM3 519 aaPredicted RBP9.66□□□□□ -0.86
CUX1-216ENST00000558469 FNBP1LQ5T0N5 605 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 DENND2CQ68D51 928 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 ANO7Q6IWH7 933 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 LRRC8BQ6P9F7 803 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 ZDHHC24Q6UX98 284 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.66□□□□□ -0.86
CUX1-216ENST00000558469 ZNF534Q76KX8 674 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 ERN2Q76MJ5 926 aaKnown RBP9.66□□□□□ -0.86
CUX1-216ENST00000558469 CAND1Q86VP6 1230 aaKnown RBP9.66□□□□□ -0.86
CUX1-216ENST00000558469 NDUFAF2Q8N183 169 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 HDDC3Q8N4P3 179 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 MCUQ8NE86 351 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 FBXO25Q8TCJ0 367 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 PWWP2AQ96N64 755 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 SERPINB12Q96P63 405 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 HDAC8Q9BY41 377 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 PABPC3Q9H361 631 aaKnown RBP9.66□□□□□ -0.86
CUX1-216ENST00000558469 XAB2Q9HCS7 855 aaKnown RBP9.66□□□□□ -0.86
CUX1-216ENST00000558469 CASS4Q9NQ75 786 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 FBXL12Q9NXK8 326 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 SCML1Q9UN30 329 aa9.66□□□□□ -0.86
CUX1-216ENST00000558469 TTC28Q96AY4 2481 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 A0A0J9YYE9 177 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 A0A0U1RQS6 177 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 AP3B1O00203 1094 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 APBB3O95704 486 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 TRBC1P01850 177 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 MLNP12872 115 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 NFKBIAP25963 317 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 HNF1BP35680 557 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 PXNP49023 591 aaPredicted RBP9.65□□□□□ -0.86
CUX1-216ENST00000558469 NPY2RP49146 381 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 NEK3P51956 506 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 ARL4CP56559 192 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 CRADDP78560 199 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 CCDC15Q0P6D6 951 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 SFSWAPQ12872 951 aaKnown RBP9.65□□□□□ -0.86
CUX1-216ENST00000558469 POU6F1Q14863 301 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 CERCAMQ5T4B2 595 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 PIP5KL1Q5T9C9 394 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 USP45Q70EL2 814 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 FAM124AQ86V42 546 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 CCDC25Q86WR0 208 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 PDIK1LQ8N165 341 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 FBXL6Q8N531 539 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 ZCCHC9Q8N567 271 aaKnown RBP9.65□□□□□ -0.86
CUX1-216ENST00000558469 CAMKK1Q8N5S9 505 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 GPR161Q8N6U8 529 aaKnown RBP9.65□□□□□ -0.86
CUX1-216ENST00000558469 TMEM105Q8N8V8 129 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 MDGA1Q8NFP4 955 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 BLOC1S5Q8TDH9 187 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 SCRN2Q96FV2 425 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 COL25A1Q9BXS0 654 aaPredicted RBP9.65□□□□□ -0.86
CUX1-216ENST00000558469 FRMD8Q9BZ67 464 aaPredicted RBP9.65□□□□□ -0.86
CUX1-216ENST00000558469 TPSD1Q9BZJ3 242 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 FAM129AQ9BZQ8 928 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 NEUROG2Q9H2A3 272 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 PCDH12Q9NPG4 1184 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 ZDHHC18Q9NUE0 388 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 BFARQ9NZS9 450 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 SERGEFQ9UGK8 458 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 EBF1Q9UH73 591 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 NFU1Q9UMS0 254 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 NCKAP1Q9Y2A7 1128 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 PPIL1Q9Y3C6 166 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 SPO11Q9Y5K1 396 aa9.65□□□□□ -0.86
CUX1-216ENST00000558469 THADAQ6YHU6 1953 aa9.64□□□□□ -0.87
CUX1-216ENST00000558469 FAM86C2PA6NEL3 165 aa9.64□□□□□ -0.87
CUX1-216ENST00000558469 CAPN8A6NHC0 703 aa9.64□□□□□ -0.87
CUX1-216ENST00000558469 NPIPB15A6NHN6 443 aaPredicted RBP9.64□□□□□ -0.87
CUX1-216ENST00000558469 SDR42E2A6NKP2 422 aa9.64□□□□□ -0.87
CUX1-216ENST00000558469 NEMP1O14524 444 aa9.64□□□□□ -0.87
CUX1-216ENST00000558469 PPFIA2O75334 1257 aa9.64□□□□□ -0.87
CUX1-216ENST00000558469 BANF1O75531 89 aa9.64□□□□□ -0.87
CUX1-216ENST00000558469 CYP2A6P11509 494 aaPredicted RBP9.64□□□□□ -0.87
CUX1-216ENST00000558469 MGAT1P26572 445 aa9.64□□□□□ -0.87
CUX1-216ENST00000558469 ECHS1P30084 290 aa9.64□□□□□ -0.87
CUX1-216ENST00000558469 TPMTP51580 245 aa9.64□□□□□ -0.87
CUX1-216ENST00000558469 ELP6Q0PNE2 266 aa9.64□□□□□ -0.87
CUX1-216ENST00000558469 PDIA2Q13087 525 aaKnown RBP9.64□□□□□ -0.87
CUX1-216ENST00000558469 MSLNQ13421 630 aaPredicted RBP9.64□□□□□ -0.87
CUX1-216ENST00000558469 SEPT6Q14141 434 aa9.64□□□□□ -0.87
CUX1-216ENST00000558469 ELF2Q15723 593 aa9.64□□□□□ -0.87
CUX1-216ENST00000558469 HIF1AQ16665 826 aa9.64□□□□□ -0.87
CUX1-216ENST00000558469 BBS9Q3SYG4 887 aa9.64□□□□□ -0.87
CUX1-216ENST00000558469 MSS51Q4VC12 460 aa9.64□□□□□ -0.87
CUX1-216ENST00000558469 CCDC38Q502W7 563 aa9.64□□□□□ -0.87
CUX1-216ENST00000558469 TMEM31Q5JXX7 168 aa9.64□□□□□ -0.87
CUX1-216ENST00000558469 HP1BP3Q5SSJ5 553 aaPredicted RBP9.64□□□□□ -0.87
CUX1-216ENST00000558469 AGBL4Q5VU57 503 aa9.64□□□□□ -0.87
CUX1-216ENST00000558469 ERAP2Q6P179 960 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms