RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 KCTD6Q8NC69 237 aa11.9□□□□□ -0.5
VRK1-204ENST00000555351 TPCN2Q8NHX9 752 aa11.9□□□□□ -0.5
VRK1-204ENST00000555351 MAML1Q92585 1016 aa11.9□□□□□ -0.5
VRK1-204ENST00000555351 GLMNQ92990 594 aa11.9□□□□□ -0.5
VRK1-204ENST00000555351 GRAMD1AQ96CP6 724 aa11.9□□□□□ -0.5
VRK1-204ENST00000555351 NXPE2Q96DL1 559 aa11.9□□□□□ -0.5
VRK1-204ENST00000555351 CCDC42Q96M95 316 aa11.9□□□□□ -0.5
VRK1-204ENST00000555351 IL12RB2Q99665 862 aa11.9□□□□□ -0.5
VRK1-204ENST00000555351 APOOQ9BUR5 198 aa11.9□□□□□ -0.5
VRK1-204ENST00000555351 BOCQ9BWV1 1114 aa11.9□□□□□ -0.5
VRK1-204ENST00000555351 SCUBE2Q9NQ36 999 aa11.9□□□□□ -0.5
VRK1-204ENST00000555351 APOBEC3BQ9UH17 382 aaKnown RBP11.9□□□□□ -0.5
VRK1-204ENST00000555351 PHTF1Q9UMS5 762 aa11.9□□□□□ -0.5
VRK1-204ENST00000555351 CLCA2Q9UQC9 943 aa11.9□□□□□ -0.5
VRK1-204ENST00000555351 PPIL1Q9Y3C6 166 aa11.9□□□□□ -0.5
VRK1-204ENST00000555351 ASPMQ8IZT6 3477 aa11.9□□□□□ -0.51
VRK1-204ENST00000555351 LRRK1Q38SD2 2015 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 LY6G6EA0A0G2JKS1 128 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 TAF4O00268 1085 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 PDE2AO00408 941 aaPredicted RBP11.89□□□□□ -0.51
VRK1-204ENST00000555351 TNFRSF10CO14798 259 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 MATN3O15232 486 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 FFAR2O15552 330 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 ABCB7O75027 752 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 RASGRP1O95267 797 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 ALPIP09923 528 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 KRT10P13645 584 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 MX2P20592 715 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 KELP23276 732 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 TRIM23P36406 574 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 SSR1P43307 286 aaKnown RBP11.89□□□□□ -0.51
VRK1-204ENST00000555351 HK3P52790 923 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 KIAA1024LP59773 190 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 INSM1Q01101 510 aaPredicted RBP11.89□□□□□ -0.51
VRK1-204ENST00000555351 INPP5AQ14642 412 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 ELOCQ15369 112 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 ZNF542PQ5EBM4 170 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 LRRC38Q5VT99 294 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 NCBP2-AS2Q69YL0 99 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 NDUFAF2Q8N183 169 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 CBARPQ8N350 705 aaPredicted RBP11.89□□□□□ -0.51
VRK1-204ENST00000555351 PGBD5Q8N414 524 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 PCDH19Q8TAB3 1148 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 WDR48Q8TAF3 677 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 LMX1AQ8TE12 382 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 SCG3Q8WXD2 468 aaKnown RBP11.89□□□□□ -0.51
VRK1-204ENST00000555351 NAT6Q93015 286 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 SCRN2Q96FV2 425 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 WDR92Q96MX6 357 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 MCCC1Q96RQ3 725 aaPredicted RBP11.89□□□□□ -0.51
VRK1-204ENST00000555351 ANP32EQ9BTT0 268 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 NHEJ1Q9H9Q4 299 aaPredicted RBP11.89□□□□□ -0.51
VRK1-204ENST00000555351 NOD2Q9HC29 1040 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 DGKBQ9Y6T7 804 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 U3KQA8 63 aa11.89□□□□□ -0.51
VRK1-204ENST00000555351 EME2A4GXA9 379 aaPredicted RBP11.88□□□□□ -0.51
VRK1-204ENST00000555351 FAM149AA5PLN7 773 aa11.88□□□□□ -0.51
VRK1-204ENST00000555351 OPA1O60313 960 aa11.88□□□□□ -0.51
VRK1-204ENST00000555351 RECQL5O94762 991 aaPredicted RBP11.88□□□□□ -0.51
VRK1-204ENST00000555351 PGLSO95336 258 aa11.88□□□□□ -0.51
VRK1-204ENST00000555351 CPP00450 1065 aa11.88□□□□□ -0.51
VRK1-204ENST00000555351 ANXA6P08133 673 aa11.88□□□□□ -0.51
VRK1-204ENST00000555351 CD48P09326 243 aa11.88□□□□□ -0.51
VRK1-204ENST00000555351 CYP2A6P11509 494 aaPredicted RBP11.88□□□□□ -0.51
VRK1-204ENST00000555351 CA4P22748 312 aa11.88□□□□□ -0.51
VRK1-204ENST00000555351 TEAD1P28347 426 aa11.88□□□□□ -0.51
VRK1-204ENST00000555351 VIPR1P32241 457 aa11.88□□□□□ -0.51
VRK1-204ENST00000555351 RPL26P61254 145 aaKnown RBP11.88□□□□□ -0.51
VRK1-204ENST00000555351 TARDBPQ13148 414 aaKnown RBP eCLIP11.88□□□□□ -0.51
VRK1-204ENST00000555351 TBX2Q13207 712 aaPredicted RBP11.88□□□□□ -0.51
VRK1-204ENST00000555351 NR0B2Q15466 257 aa11.88□□□□□ -0.51
VRK1-204ENST00000555351 PRRT3Q5FWE3 981 aa11.88□□□□□ -0.51
VRK1-204ENST00000555351 C6orf132Q5T0Z8 1188 aa11.88□□□□□ -0.51
VRK1-204ENST00000555351 FAXCQ5TGI0 409 aa11.88□□□□□ -0.51
VRK1-204ENST00000555351 CDCP2Q5VXM1 449 aa11.88□□□□□ -0.51
VRK1-204ENST00000555351 ESRP1Q6NXG1 681 aaKnown RBP11.88□□□□□ -0.51
VRK1-204ENST00000555351 USP45Q70EL2 814 aa11.88□□□□□ -0.51
VRK1-204ENST00000555351 PAF1Q8N7H5 531 aa11.88□□□□□ -0.51
VRK1-204ENST00000555351 SLC35G2Q8TBE7 412 aa11.88□□□□□ -0.51
VRK1-204ENST00000555351 MDM1Q8TC05 714 aa11.88□□□□□ -0.51
VRK1-204ENST00000555351 HDAC11Q96DB2 347 aa11.88□□□□□ -0.51
VRK1-204ENST00000555351 COQ10AQ96MF6 247 aa11.88□□□□□ -0.51
VRK1-204ENST00000555351 NSMCE3Q96MG7 304 aa11.88□□□□□ -0.51
VRK1-204ENST00000555351 LRRC61Q9BV99 259 aa11.88□□□□□ -0.51
VRK1-204ENST00000555351 PACSIN1Q9BY11 444 aa11.88□□□□□ -0.51
VRK1-204ENST00000555351 POLR1EQ9GZS1 481 aaKnown RBP11.88□□□□□ -0.51
VRK1-204ENST00000555351 DNPEPQ9ULA0 475 aa11.88□□□□□ -0.51
VRK1-204ENST00000555351 RPL26L1Q9UNX3 145 aaKnown RBP11.88□□□□□ -0.51
VRK1-204ENST00000555351 COQ6Q9Y2Z9 468 aa11.88□□□□□ -0.51
VRK1-204ENST00000555351 AKR1B15C9JRZ8 316 aaPredicted RBP11.87□□□□□ -0.51
VRK1-204ENST00000555351 CACNB4O00305 520 aaPredicted RBP11.87□□□□□ -0.51
VRK1-204ENST00000555351 MFSD11O43934 449 aa11.87□□□□□ -0.51
VRK1-204ENST00000555351 FZD6O60353 706 aa11.87□□□□□ -0.51
VRK1-204ENST00000555351 GCATO75600 419 aa11.87□□□□□ -0.51
VRK1-204ENST00000555351 NEBLO76041 1014 aa11.87□□□□□ -0.51
VRK1-204ENST00000555351 HEXIM1O94992 359 aaKnown RBP11.87□□□□□ -0.51
VRK1-204ENST00000555351 MT-CO3P00414 261 aa11.87□□□□□ -0.51
VRK1-204ENST00000555351 TSHRP16473 764 aa11.87□□□□□ -0.51
VRK1-204ENST00000555351 GM2AP17900 193 aa11.87□□□□□ -0.51
VRK1-204ENST00000555351 KDELR1P24390 212 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms