RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 SCUBE2Q9NQ36 999 aa16.13■□□□□ 0.17
CCDC88C-209ENST00000554872 EVA1BQ9NVM1 165 aa16.13■□□□□ 0.17
CCDC88C-209ENST00000554872 KLF15Q9UIH9 416 aa16.13■□□□□ 0.17
CCDC88C-209ENST00000554872 C3orf70A6NLC5 250 aaPredicted RBP16.12■□□□□ 0.17
CCDC88C-209ENST00000554872 PSMD11O00231 422 aa16.12■□□□□ 0.17
CCDC88C-209ENST00000554872 GP1BAP07359 652 aa16.12■□□□□ 0.17
CCDC88C-209ENST00000554872 JUNDP17535 347 aa16.12■□□□□ 0.17
CCDC88C-209ENST00000554872 BLKP51451 505 aa16.12■□□□□ 0.17
CCDC88C-209ENST00000554872 DNAJC3Q13217 504 aa16.12■□□□□ 0.17
CCDC88C-209ENST00000554872 MESDQ14696 234 aa16.12■□□□□ 0.17
CCDC88C-209ENST00000554872 NFATC4Q14934 902 aa16.12■□□□□ 0.17
CCDC88C-209ENST00000554872 SLC9A4Q6AI14 798 aa16.12■□□□□ 0.17
CCDC88C-209ENST00000554872 ZCCHC8Q6NZY4 707 aaKnown RBP16.12■□□□□ 0.17
CCDC88C-209ENST00000554872 DHRS13Q6UX07 377 aa16.12■□□□□ 0.17
CCDC88C-209ENST00000554872 CBARPQ8N350 705 aaPredicted RBP16.12■□□□□ 0.17
CCDC88C-209ENST00000554872 ATL2Q8NHH9 583 aa16.12■□□□□ 0.17
CCDC88C-209ENST00000554872 RAPGEF5Q92565 580 aa16.12■□□□□ 0.17
CCDC88C-209ENST00000554872 RNF157Q96PX1 679 aa16.12■□□□□ 0.17
CCDC88C-209ENST00000554872 ANP32EQ9BTT0 268 aa16.12■□□□□ 0.17
CCDC88C-209ENST00000554872 DTLQ9NZJ0 730 aa16.12■□□□□ 0.17
CCDC88C-209ENST00000554872 SPASTQ9UBP0 616 aa16.12■□□□□ 0.17
CCDC88C-209ENST00000554872 SALL4Q9UJQ4 1053 aa16.12■□□□□ 0.17
CCDC88C-209ENST00000554872 PHTF1Q9UMS5 762 aa16.12■□□□□ 0.17
CCDC88C-209ENST00000554872 LY6G6EA0A0G2JKS1 128 aa16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 LMO7DNF2Z398 122 aa16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 K7ESM1 405 aa16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 AQP9O43315 295 aa16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 LZTS3O60299 673 aaPredicted RBP16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 FZD6O60353 706 aa16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 RECQL5O94762 991 aaPredicted RBP16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 PGLSO95336 258 aa16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 CPP00450 1065 aa16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 ELFN1P0C7U0 828 aa16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 GM2AP17900 193 aa16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 HNF1BP35680 557 aa16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 TRIM23P36406 574 aa16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 E2F1Q01094 437 aa16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 TRAF2Q12933 501 aa16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 ESRP1Q6NXG1 681 aaKnown RBP16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 RAVER1Q8IY67 606 aaKnown RBP16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 PHACTR4Q8IZ21 702 aa16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 PLD5Q8N7P1 536 aa16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 ZCCHC14Q8WYQ9 949 aaKnown RBP16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 SCRN2Q96FV2 425 aa16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 COQ10AQ96MF6 247 aa16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 DDX56Q9NY93 547 aaKnown RBP16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 B4GALT6Q9UBX8 382 aa16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 APOBEC3BQ9UH17 382 aaKnown RBP16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 COQ6Q9Y2Z9 468 aa16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 PCDHGC4Q9Y5F7 938 aa16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 U3KQA8 63 aa16.11■□□□□ 0.17
CCDC88C-209ENST00000554872 A0A0A6YYK5 440 aaPredicted RBP16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 GOLGA8CPA6NN73 597 aa16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 HEXIM1O94992 359 aaKnown RBP16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 ZFXP17010 805 aaPredicted RBP16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 HTR1BP28222 390 aa16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 TEAD1P28347 426 aa16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 VIPR1P32241 457 aa16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 GJC1P36383 396 aa16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 DUSP3P51452 185 aaPredicted RBP16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 KIAA1024LP59773 190 aa16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 RPL26P61254 145 aaKnown RBP16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 GBE1Q04446 702 aa16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 PPIDQ08752 370 aaKnown RBP16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 INPP5AQ14642 412 aa16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 TAZQ16635 292 aa16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 ZNF542PQ5EBM4 170 aa16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 LVRNQ6Q4G3 990 aa16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 RHOT1Q8IXI2 618 aa16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 FSTL5Q8N475 847 aaPredicted RBP16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 APOLD1Q96LR9 279 aa16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 ZNF830Q96NB3 372 aaPredicted RBP16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 PANX2Q96RD6 677 aa16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 APOOQ9BUR5 198 aa16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 LRRC61Q9BV99 259 aa16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 ZMIZ1Q9ULJ6 1067 aa16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 PNMA8BQ9ULN7 279 aaPredicted RBP16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 RPL26L1Q9UNX3 145 aaKnown RBP16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 DGKBQ9Y6T7 804 aa16.1■□□□□ 0.17
CCDC88C-209ENST00000554872 LRP4O75096 1905 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 ANKRD11Q6UB99 2663 aaPredicted RBP16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 LRRD1A4D1F6 860 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 TNFRSF10CO14798 259 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 FFAR2O15552 330 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 PSTPIP1O43586 416 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 CYP2A6P11509 494 aaPredicted RBP16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 KRT10P13645 584 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 CCNB1P14635 433 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 ZNF75DP51815 510 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 HK3P52790 923 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 MAXP61244 160 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 IFI35P80217 286 aaPredicted RBP16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 PPARDQ03181 441 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 SLC10A2Q12908 348 aaPredicted RBP16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 CNGA3Q16281 694 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 ARMC12Q5T9G4 340 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 KDM7AQ6ZMT4 941 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 USP45Q70EL2 814 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 PROSER1Q86XN7 944 aa16.09■□□□□ 0.17
CCDC88C-209ENST00000554872 PDCD7Q8N8D1 485 aaKnown RBP16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms