RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 VIPR1P32241 457 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 CNR2P34972 360 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 MMP12P39900 470 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 RALGDSQ12967 914 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 SRSF5Q13243 272 aaKnown RBP12.29□□□□□ -0.44
SHMT2-209ENST00000553949 KCNJ11Q14654 390 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 PTPRRQ15256 657 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 TPSAB1Q15661 275 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 TMEM52BQ4KMG9 183 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 ANKRD22Q5VYY1 191 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 DENND5AQ6IQ26 1287 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 C8orf74Q6P047 294 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 SLC36A4Q6YBV0 504 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 DPPA4Q7L190 304 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 LINC00523Q86TU6 105 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 ZBTB44Q8NCP5 570 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 OR2T34Q8NGX1 318 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 LYSMD1Q96S90 227 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 PRRX2Q99811 253 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 ERP44Q9BS26 406 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 LRRC1Q9BTT6 524 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 GPR174Q9BXC1 333 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 TRIM31Q9BZY9 425 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 ARNT2Q9HBZ2 717 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 PREBQ9HCU5 417 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 TPX2Q9ULW0 747 aaKnown RBP12.29□□□□□ -0.44
SHMT2-209ENST00000553949 PCDHGA2Q9Y5H1 932 aa12.29□□□□□ -0.44
SHMT2-209ENST00000553949 TBC1D3DA0A087WVF3 549 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 TBC1D3IA0A087WXS9 549 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 TBC1D3EA0A087X179 549 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 TBC1D3KA0A087X1G2 549 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 TBC1D3FA6NER0 549 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-209ENST00000553949 PRR23AA6NEV1 266 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 EFCAB8A8MWE9 144 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 A8MX80 341 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 TBC1D3LB9A6J9 549 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 DNALI1O14645 258 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-209ENST00000553949 MAP3K13O43283 966 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 PCDH8O95206 1070 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 TBC1D3HP0C7X1 549 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 PIRTP0C851 137 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 GRIA1P42261 906 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 CDK16Q00536 496 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 RPL6Q02878 288 aaKnown RBP12.28□□□□□ -0.44
SHMT2-209ENST00000553949 RNASEH2BQ5TBB1 312 aaKnown RBP12.28□□□□□ -0.44
SHMT2-209ENST00000553949 IZUMO3Q5VZ72 239 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 TBC1D3GQ6DHY5 549 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 TBC1D3CQ6IPX1 549 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 NEK5Q6P3R8 708 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 PPP1R21Q6ZMI0 780 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 PCGF5Q86SE9 256 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 TSPAN33Q86UF1 283 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 C11orf74Q86VG3 221 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 PPIL6Q8IXY8 311 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 TBC1D3Q8IZP1 549 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-209ENST00000553949 NAT8LQ8N9F0 302 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 LRRN4CLQ8ND94 238 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 OR52K1Q8NGK4 314 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 CXorf40AQ8TE69 158 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 SNF8Q96H20 258 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 SRPK1Q96SB4 655 aaKnown RBP12.28□□□□□ -0.44
SHMT2-209ENST00000553949 WRAP53Q9BUR4 548 aaKnown RBP12.28□□□□□ -0.44
SHMT2-209ENST00000553949 RAB17Q9H0T7 212 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 C6orf106Q9H6K1 298 aaPredicted RBP12.28□□□□□ -0.44
SHMT2-209ENST00000553949 MAGEE1Q9HCI5 957 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 CASS4Q9NQ75 786 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 PIH1D1Q9NWS0 290 aaKnown RBP12.28□□□□□ -0.44
SHMT2-209ENST00000553949 SNX24Q9Y343 169 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 UTP11Q9Y3A2 253 aaKnown RBP12.28□□□□□ -0.44
SHMT2-209ENST00000553949 SPO11Q9Y5K1 396 aa12.28□□□□□ -0.44
SHMT2-209ENST00000553949 A0A0U1RQS6 177 aa12.27□□□□□ -0.45
SHMT2-209ENST00000553949 C1orf232A0A0U1RR37 186 aa12.27□□□□□ -0.45
SHMT2-209ENST00000553949 A0A1W2PQU0 124 aa12.27□□□□□ -0.45
SHMT2-209ENST00000553949 C10orf142B7Z368 130 aa12.27□□□□□ -0.45
SHMT2-209ENST00000553949 H0Y858 1186 aa12.27□□□□□ -0.45
SHMT2-209ENST00000553949 MMP20O60882 483 aa12.27□□□□□ -0.45
SHMT2-209ENST00000553949 RNGTTO60942 597 aaKnown RBP12.27□□□□□ -0.45
SHMT2-209ENST00000553949 LILRB5O75023 590 aa12.27□□□□□ -0.45
SHMT2-209ENST00000553949 TMEM63AO94886 807 aa12.27□□□□□ -0.45
SHMT2-209ENST00000553949 SEC31AO94979 1220 aaKnown RBP12.27□□□□□ -0.45
SHMT2-209ENST00000553949 HEXIM1O94992 359 aaKnown RBP12.27□□□□□ -0.45
SHMT2-209ENST00000553949 TPH1P17752 444 aa12.27□□□□□ -0.45
SHMT2-209ENST00000553949 LHCGRP22888 699 aa12.27□□□□□ -0.45
SHMT2-209ENST00000553949 RPL21P46778 160 aaKnown RBP12.27□□□□□ -0.45
SHMT2-209ENST00000553949 LIG3P49916 1009 aa12.27□□□□□ -0.45
SHMT2-209ENST00000553949 PPP2CBP62714 309 aa12.27□□□□□ -0.45
SHMT2-209ENST00000553949 RPS21P63220 83 aaKnown RBP12.27□□□□□ -0.45
SHMT2-209ENST00000553949 PPP2CAP67775 309 aa12.27□□□□□ -0.45
SHMT2-209ENST00000553949 SARNPP82979 210 aaKnown RBP12.27□□□□□ -0.45
SHMT2-209ENST00000553949 SLC7A5Q01650 507 aa12.27□□□□□ -0.45
SHMT2-209ENST00000553949 CDH17Q12864 832 aa12.27□□□□□ -0.45
SHMT2-209ENST00000553949 MSLNQ13421 630 aaPredicted RBP12.27□□□□□ -0.45
SHMT2-209ENST00000553949 ARHGEF7Q14155 803 aa12.27□□□□□ -0.45
SHMT2-209ENST00000553949 CNGA3Q16281 694 aa12.27□□□□□ -0.45
SHMT2-209ENST00000553949 CDKN3Q16667 212 aa12.27□□□□□ -0.45
SHMT2-209ENST00000553949 GLE1Q53GS7 698 aaKnown RBP12.27□□□□□ -0.45
SHMT2-209ENST00000553949 SEL1L3Q68CR1 1132 aa12.27□□□□□ -0.45
SHMT2-209ENST00000553949 LRRC66Q68CR7 880 aa12.27□□□□□ -0.45
SHMT2-209ENST00000553949 KIAA0895LQ68EN5 471 aa12.27□□□□□ -0.45
SHMT2-209ENST00000553949 DUPD1Q68J44 220 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms